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Cluster: HRGMv2_2483_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2483_1 HRGMv2_2483_1_263 262615 262941 + 2.A.7.1.1
peptidase HRGMv2_2483_1 HRGMv2_2483_1_264 262975 264060 - M24.006
TF HRGMv2_2483_1 HRGMv2_2483_1_265 264388 265389 + LacI
CAZyme HRGMv2_2483_1 HRGMv2_2483_1_266 265485 266483 + GT4
CAZyme HRGMv2_2483_1 HRGMv2_2483_1_267 266485 267819 + GT4
pfam HRGMv2_2483_1 HRGMv2_2483_1_268 268169 270115 + tRNA-synt_2b | TGS | HGTP_anticodon | tRNA_SAD
CAZyme HRGMv2_2483_1 HRGMv2_2483_1_269 270514 272334 + PL9
CAZyme HRGMv2_2483_1 HRGMv2_2483_1_270 272520 274919 + CBM13 | PL9
Gene ID: HRGMv2_2483_1_263
Type: TC
Location: 262615 - 262941 (+)
Gene ID: HRGMv2_2483_1_264
Type: peptidase
Location: 262975 - 264060 (-)
Gene ID: HRGMv2_2483_1_265
Type: TF
Location: 264388 - 265389 (+)
Gene ID: HRGMv2_2483_1_266
Type: CAZyme
Location: 265485 - 266483 (+)
Gene ID: HRGMv2_2483_1_267
Type: CAZyme
Location: 266485 - 267819 (+)
Gene ID: HRGMv2_2483_1_268
Type: pfam
Location: 268169 - 270115 (+)
Gene ID: HRGMv2_2483_1_269
Type: CAZyme
Location: 270514 - 272334 (+)
Gene ID: HRGMv2_2483_1_270
Type: CAZyme
Location: 272520 - 274919 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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