Cluster: HRGMv2_2483_CGC23
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_2483
- CGC Family ID: CGCFAM_04138
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2483_4 | HRGMv2_2483_4_48 | 50316 | 51926 | - | GH13_31 |
| CAZyme | HRGMv2_2483_4 | HRGMv2_2483_4_49 | 52045 | 53490 | - | GH13_18 |
| TC | HRGMv2_2483_4 | HRGMv2_2483_4_50 | 53879 | 54712 | - | 3.A.1.1.28 |
| TC | HRGMv2_2483_4 | HRGMv2_2483_4_51 | 54725 | 55591 | - | 3.A.1.1.28 |
| TC | HRGMv2_2483_4 | HRGMv2_2483_4_52 | 55604 | 56875 | - | 3.A.1.1.28 |
| CAZyme | HRGMv2_2483_4 | HRGMv2_2483_4_53 | 56887 | 59049 | - | GH36 |
| TF | HRGMv2_2483_4 | HRGMv2_2483_4_54 | 59160 | 59993 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_2483_4 | HRGMv2_2483_4_55 | 60089 | 61699 | - | CBM61 | GH53 |
| TC | HRGMv2_2483_4 | HRGMv2_2483_4_56 | 61730 | 63409 | - | 4.A.3.1.1 |
| TC | HRGMv2_2483_4 | HRGMv2_2483_4_57 | 63651 | 63962 | - | 4.A.3.1.2 |
| CAZyme | HRGMv2_2483_4 | HRGMv2_2483_4_58 | 63975 | 65375 | - | GH1 |
| pfam | HRGMv2_2483_4 | HRGMv2_2483_4_59 | 65386 | 66222 | - | PRD | PRD | CAT_RBD |
| pfam | HRGMv2_2483_4 | HRGMv2_2483_4_60 | 66427 | 67323 | - | Aldose_epim |
| TC | HRGMv2_2483_4 | HRGMv2_2483_4_61 | 67433 | 68833 | - | 4.A.5.1.6 |
Gene ID: HRGMv2_2483_4_48
Type: CAZyme
Location: 50316 - 51926 (-)
Type: CAZyme
Location: 50316 - 51926 (-)
Gene ID: HRGMv2_2483_4_49
Type: CAZyme
Location: 52045 - 53490 (-)
Type: CAZyme
Location: 52045 - 53490 (-)
Gene ID: HRGMv2_2483_4_50
Type: TC
Location: 53879 - 54712 (-)
Type: TC
Location: 53879 - 54712 (-)
Gene ID: HRGMv2_2483_4_51
Type: TC
Location: 54725 - 55591 (-)
Type: TC
Location: 54725 - 55591 (-)
Gene ID: HRGMv2_2483_4_52
Type: TC
Location: 55604 - 56875 (-)
Type: TC
Location: 55604 - 56875 (-)
Gene ID: HRGMv2_2483_4_53
Type: CAZyme
Location: 56887 - 59049 (-)
Type: CAZyme
Location: 56887 - 59049 (-)
Gene ID: HRGMv2_2483_4_54
Type: TF
Location: 59160 - 59993 (+)
Type: TF
Location: 59160 - 59993 (+)
Gene ID: HRGMv2_2483_4_55
Type: CAZyme
Location: 60089 - 61699 (-)
Type: CAZyme
Location: 60089 - 61699 (-)
Gene ID: HRGMv2_2483_4_56
Type: TC
Location: 61730 - 63409 (-)
Type: TC
Location: 61730 - 63409 (-)
Gene ID: HRGMv2_2483_4_57
Type: TC
Location: 63651 - 63962 (-)
Type: TC
Location: 63651 - 63962 (-)
Gene ID: HRGMv2_2483_4_58
Type: CAZyme
Location: 63975 - 65375 (-)
Type: CAZyme
Location: 63975 - 65375 (-)
Gene ID: HRGMv2_2483_4_59
Type: pfam
Location: 65386 - 66222 (-)
Type: pfam
Location: 65386 - 66222 (-)
Gene ID: HRGMv2_2483_4_60
Type: pfam
Location: 66427 - 67323 (-)
Type: pfam
Location: 66427 - 67323 (-)
Gene ID: HRGMv2_2483_4_61
Type: TC
Location: 67433 - 68833 (-)
Type: TC
Location: 67433 - 68833 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus gallolyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.