Cluster: HRGMv2_2483_CGC20
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2483
- CGC Family ID: CGCFAM_01747
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2483_2 | HRGMv2_2483_2_395 | 414152 | 415558 | - | 3.A.2.1.5 |
| TC | HRGMv2_2483_2 | HRGMv2_2483_2_396 | 415625 | 416503 | - | 3.A.2.1.5 |
| TC | HRGMv2_2483_2 | HRGMv2_2483_2_397 | 416518 | 418023 | - | 3.A.2.1.2 |
| pfam | HRGMv2_2483_2 | HRGMv2_2483_2_398 | 418039 | 418575 | - | OSCP |
| pfam | HRGMv2_2483_2 | HRGMv2_2483_2_399 | 418575 | 419072 | - | ATP-synt_B |
| TC | HRGMv2_2483_2 | HRGMv2_2483_2_400 | 419094 | 419807 | - | 3.A.2.1.2 |
| pfam | HRGMv2_2483_2 | HRGMv2_2483_2_401 | 419846 | 420049 | - | ATP-synt_C |
| CAZyme | HRGMv2_2483_2 | HRGMv2_2483_2_402 | 420352 | 422748 | - | GT35 |
| CAZyme | HRGMv2_2483_2 | HRGMv2_2483_2_403 | 422766 | 424196 | - | GT5 |
| pfam | HRGMv2_2483_2 | HRGMv2_2483_2_404 | 424193 | 425329 | - | NTP_transferase | Hexapep_GlmU |
| pfam | HRGMv2_2483_2 | HRGMv2_2483_2_405 | 425319 | 426461 | - | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| CAZyme | HRGMv2_2483_2 | HRGMv2_2483_2_406 | 426463 | 428367 | - | CBM48 | GH13_9 |
| CAZyme | HRGMv2_2483_2 | HRGMv2_2483_2_407 | 428434 | 430746 | - | CBM41 | GH13_14 |
| pfam | HRGMv2_2483_2 | HRGMv2_2483_2_408 | 430764 | 431783 | - | DAGK_cat | NAD_kinase | YegS_C |
| pfam | HRGMv2_2483_2 | HRGMv2_2483_2_409 | 431802 | 433760 | - | BRCT | DNA_ligase_aden | DNA_ligase_ZBD | DNA_ligase_OB | HHH_2 | HHH_5 | HHH_5 | Nlig-Ia |
| TC | HRGMv2_2483_2 | HRGMv2_2483_2_410 | 433865 | 434374 | - | 2.A.88.9.1 |
| pfam | HRGMv2_2483_2 | HRGMv2_2483_2_411 | 434519 | 434944 | + | GtrA_DPMS_TM |
| TC | HRGMv2_2483_2 | HRGMv2_2483_2_412 | 434959 | 435891 | - | 9.B.126.2.5 |
Gene ID: HRGMv2_2483_2_395
Type: TC
Location: 414152 - 415558 (-)
Type: TC
Location: 414152 - 415558 (-)
Gene ID: HRGMv2_2483_2_396
Type: TC
Location: 415625 - 416503 (-)
Type: TC
Location: 415625 - 416503 (-)
Gene ID: HRGMv2_2483_2_397
Type: TC
Location: 416518 - 418023 (-)
Type: TC
Location: 416518 - 418023 (-)
Gene ID: HRGMv2_2483_2_398
Type: pfam
Location: 418039 - 418575 (-)
Type: pfam
Location: 418039 - 418575 (-)
Gene ID: HRGMv2_2483_2_399
Type: pfam
Location: 418575 - 419072 (-)
Type: pfam
Location: 418575 - 419072 (-)
Gene ID: HRGMv2_2483_2_400
Type: TC
Location: 419094 - 419807 (-)
Type: TC
Location: 419094 - 419807 (-)
Gene ID: HRGMv2_2483_2_401
Type: pfam
Location: 419846 - 420049 (-)
Type: pfam
Location: 419846 - 420049 (-)
Gene ID: HRGMv2_2483_2_402
Type: CAZyme
Location: 420352 - 422748 (-)
Type: CAZyme
Location: 420352 - 422748 (-)
Gene ID: HRGMv2_2483_2_403
Type: CAZyme
Location: 422766 - 424196 (-)
Type: CAZyme
Location: 422766 - 424196 (-)
Gene ID: HRGMv2_2483_2_404
Type: pfam
Location: 424193 - 425329 (-)
Type: pfam
Location: 424193 - 425329 (-)
Gene ID: HRGMv2_2483_2_405
Type: pfam
Location: 425319 - 426461 (-)
Type: pfam
Location: 425319 - 426461 (-)
Gene ID: HRGMv2_2483_2_406
Type: CAZyme
Location: 426463 - 428367 (-)
Type: CAZyme
Location: 426463 - 428367 (-)
Gene ID: HRGMv2_2483_2_407
Type: CAZyme
Location: 428434 - 430746 (-)
Type: CAZyme
Location: 428434 - 430746 (-)
Gene ID: HRGMv2_2483_2_408
Type: pfam
Location: 430764 - 431783 (-)
Type: pfam
Location: 430764 - 431783 (-)
Gene ID: HRGMv2_2483_2_409
Type: pfam
Location: 431802 - 433760 (-)
Type: pfam
Location: 431802 - 433760 (-)
Gene ID: HRGMv2_2483_2_410
Type: TC
Location: 433865 - 434374 (-)
Type: TC
Location: 433865 - 434374 (-)
Gene ID: HRGMv2_2483_2_411
Type: pfam
Location: 434519 - 434944 (+)
Type: pfam
Location: 434519 - 434944 (+)
Gene ID: HRGMv2_2483_2_412
Type: TC
Location: 434959 - 435891 (-)
Type: TC
Location: 434959 - 435891 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus gallolyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.