Cluster: HRGMv2_2478_CGC7
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2478
- CGC Family ID: CGCFAM_00102
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2478_3 | HRGMv2_2478_3_2 | 1409 | 2473 | - | GT113 |
| CAZyme | HRGMv2_2478_3 | HRGMv2_2478_3_3 | 2470 | 3546 | - | GT113 |
| pfam | HRGMv2_2478_3 | HRGMv2_2478_3_4 | 3565 | 4329 | - | Sec-ASP3 |
| TC | HRGMv2_2478_3 | HRGMv2_2478_3_5 | 4322 | 5908 | - | 3.A.5.10.1 |
| pfam | HRGMv2_2478_3 | HRGMv2_2478_3_6 | 5901 | 7490 | - | Asp1 |
| TC | HRGMv2_2478_3 | HRGMv2_2478_3_7 | 7493 | 8731 | - | 3.A.5.10.1 |
| TC | HRGMv2_2478_3 | HRGMv2_2478_3_8 | 8748 | 11111 | - | 3.A.5.10.1 |
| NULL(UNKNOWN) | HRGMv2_2478_3 | HRGMv2_2478_3_9 | 11124 | 11324 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_2478_3 | HRGMv2_2478_3_10 | 11353 | 12672 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2478_3 | HRGMv2_2478_3_11 | 12662 | 14143 | - | GT4 |
| TC | HRGMv2_2478_3 | HRGMv2_2478_3_12 | 15095 | 16357 | + | 2.A.40.1.2 |
| TC | HRGMv2_2478_3 | HRGMv2_2478_3_13 | 16520 | 18439 | - | 3.A.3.5.19 |
Gene ID: HRGMv2_2478_3_2
Type: CAZyme
Location: 1409 - 2473 (-)
Type: CAZyme
Location: 1409 - 2473 (-)
Gene ID: HRGMv2_2478_3_3
Type: CAZyme
Location: 2470 - 3546 (-)
Type: CAZyme
Location: 2470 - 3546 (-)
Gene ID: HRGMv2_2478_3_4
Type: pfam
Location: 3565 - 4329 (-)
Type: pfam
Location: 3565 - 4329 (-)
Gene ID: HRGMv2_2478_3_5
Type: TC
Location: 4322 - 5908 (-)
Type: TC
Location: 4322 - 5908 (-)
Gene ID: HRGMv2_2478_3_6
Type: pfam
Location: 5901 - 7490 (-)
Type: pfam
Location: 5901 - 7490 (-)
Gene ID: HRGMv2_2478_3_7
Type: TC
Location: 7493 - 8731 (-)
Type: TC
Location: 7493 - 8731 (-)
Gene ID: HRGMv2_2478_3_8
Type: TC
Location: 8748 - 11111 (-)
Type: TC
Location: 8748 - 11111 (-)
Gene ID: HRGMv2_2478_3_9
Type:
Location: 11124 - 11324 (-)
Type:
Location: 11124 - 11324 (-)
Gene ID: HRGMv2_2478_3_10
Type:
Location: 11353 - 12672 (-)
Type:
Location: 11353 - 12672 (-)
Gene ID: HRGMv2_2478_3_11
Type: CAZyme
Location: 12662 - 14143 (-)
Type: CAZyme
Location: 12662 - 14143 (-)
Gene ID: HRGMv2_2478_3_12
Type: TC
Location: 15095 - 16357 (+)
Type: TC
Location: 15095 - 16357 (+)
Gene ID: HRGMv2_2478_3_13
Type: TC
Location: 16520 - 18439 (-)
Type: TC
Location: 16520 - 18439 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Weissella
Species
Weissella koreensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.