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Cluster: HRGMv2_2477_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2477_1 HRGMv2_2477_1_229 244134 244976 + 2.A.115.1.1
CAZyme HRGMv2_2477_1 HRGMv2_2477_1_230 245035 246681 - GH13_31
CAZyme HRGMv2_2477_1 HRGMv2_2477_1_231 246691 248115 - GH13_31
CAZyme HRGMv2_2477_1 HRGMv2_2477_1_232 248339 250123 - CBM34 | GH13_20
TC HRGMv2_2477_1 HRGMv2_2477_1_233 250173 251276 - 3.A.1.1.27
TC HRGMv2_2477_1 HRGMv2_2477_1_234 251632 252864 + 3.A.1.1.27
TC HRGMv2_2477_1 HRGMv2_2477_1_235 252922 254283 + 3.A.1.1.27
TC HRGMv2_2477_1 HRGMv2_2477_1_236 254286 255134 + 3.A.1.1.27
TF HRGMv2_2477_1 HRGMv2_2477_1_237 255196 256197 + LacI
TC HRGMv2_2477_1 HRGMv2_2477_1_238 256352 257749 - 2.A.3.1.20
TF HRGMv2_2477_1 HRGMv2_2477_1_239 257883 259430 - 0037176
TC HRGMv2_2477_1 HRGMv2_2477_1_240 259600 260865 + 2.A.1.6.2
Gene ID: HRGMv2_2477_1_229
Type: TC
Location: 244134 - 244976 (+)
Gene ID: HRGMv2_2477_1_230
Type: CAZyme
Location: 245035 - 246681 (-)
Gene ID: HRGMv2_2477_1_231
Type: CAZyme
Location: 246691 - 248115 (-)
Gene ID: HRGMv2_2477_1_232
Type: CAZyme
Location: 248339 - 250123 (-)
Gene ID: HRGMv2_2477_1_233
Type: TC
Location: 250173 - 251276 (-)
Gene ID: HRGMv2_2477_1_234
Type: TC
Location: 251632 - 252864 (+)
Gene ID: HRGMv2_2477_1_235
Type: TC
Location: 252922 - 254283 (+)
Gene ID: HRGMv2_2477_1_236
Type: TC
Location: 254286 - 255134 (+)
Gene ID: HRGMv2_2477_1_237
Type: TF
Location: 255196 - 256197 (+)
Gene ID: HRGMv2_2477_1_238
Type: TC
Location: 256352 - 257749 (-)
Gene ID: HRGMv2_2477_1_239
Type: TF
Location: 257883 - 259430 (-)
Gene ID: HRGMv2_2477_1_240
Type: TC
Location: 259600 - 260865 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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