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Cluster: HRGMv2_2474_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2474_2 HRGMv2_2474_2_62 69473 71044 + 3.A.1.3.20
TC HRGMv2_2474_2 HRGMv2_2474_2_63 71045 71782 + 3.A.1.3.20
pfam HRGMv2_2474_2 HRGMv2_2474_2_64 71921 73282 + Mur_ligase | Mur_ligase_C | Mur_ligase_M | MurD-like_N
CAZyme HRGMv2_2474_2 HRGMv2_2474_2_65 73284 74378 + GT28
pfam HRGMv2_2474_2 HRGMv2_2474_2_66 74378 75415 + FtsQ_DivIB_C | POTRA_1
TC HRGMv2_2474_2 HRGMv2_2474_2_67 75511 76248 - 3.A.1.3.25
TC HRGMv2_2474_2 HRGMv2_2474_2_68 76262 78406 - 3.A.1.3.25
TC HRGMv2_2474_2 HRGMv2_2474_2_69 78645 79301 + 9.B.27.2.3
Gene ID: HRGMv2_2474_2_62
Type: TC
Location: 69473 - 71044 (+)
Gene ID: HRGMv2_2474_2_63
Type: TC
Location: 71045 - 71782 (+)
Gene ID: HRGMv2_2474_2_64
Type: pfam
Location: 71921 - 73282 (+)
Gene ID: HRGMv2_2474_2_65
Type: CAZyme
Location: 73284 - 74378 (+)
Gene ID: HRGMv2_2474_2_66
Type: pfam
Location: 74378 - 75415 (+)
Gene ID: HRGMv2_2474_2_67
Type: TC
Location: 75511 - 76248 (-)
Gene ID: HRGMv2_2474_2_68
Type: TC
Location: 76262 - 78406 (-)
Gene ID: HRGMv2_2474_2_69
Type: TC
Location: 78645 - 79301 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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