Cluster: HRGMv2_2460_CGC5
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2460
- CGC Family ID: CGCFAM_06130
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2460_9 | HRGMv2_2460_9_19 | 16309 | 17583 | - | GT1 |
| pfam | HRGMv2_2460_9 | HRGMv2_2460_9_20 | 17841 | 18617 | + | adh_short | Epimerase | Sacchrp_dh_NADP | KR | adh_short_C2 |
| CAZyme | HRGMv2_2460_9 | HRGMv2_2460_9_21 | 18614 | 19756 | + | GT21 |
| NULL(UNKNOWN) | HRGMv2_2460_9 | HRGMv2_2460_9_22 | 19749 | 20405 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2460_9 | HRGMv2_2460_9_23 | 20365 | 21648 | + | GT1 |
| NULL(UNKNOWN) | HRGMv2_2460_9 | HRGMv2_2460_9_24 | 21739 | 22224 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2460_9 | HRGMv2_2460_9_25 | 22228 | 23583 | - | DnaJ |
| TC | HRGMv2_2460_9 | HRGMv2_2460_9_26 | 23594 | 25363 | - | 1.A.33.1.4 |
| TC | HRGMv2_2460_9 | HRGMv2_2460_9_27 | 25710 | 26648 | - | 2.A.28.2.6 |
| pfam | HRGMv2_2460_9 | HRGMv2_2460_9_28 | 26791 | 27240 | - | dCMP_cyt_deam_1 |
| TC | HRGMv2_2460_9 | HRGMv2_2460_9_29 | 27251 | 27988 | - | 3.A.1.142.1 |
| TC | HRGMv2_2460_9 | HRGMv2_2460_9_30 | 27985 | 28866 | - | 3.A.1.142.1 |
Gene ID: HRGMv2_2460_9_19
Type: CAZyme
Location: 16309 - 17583 (-)
Type: CAZyme
Location: 16309 - 17583 (-)
Gene ID: HRGMv2_2460_9_20
Type: pfam
Location: 17841 - 18617 (+)
Type: pfam
Location: 17841 - 18617 (+)
Gene ID: HRGMv2_2460_9_21
Type: CAZyme
Location: 18614 - 19756 (+)
Type: CAZyme
Location: 18614 - 19756 (+)
Gene ID: HRGMv2_2460_9_22
Type:
Location: 19749 - 20405 (+)
Type:
Location: 19749 - 20405 (+)
Gene ID: HRGMv2_2460_9_23
Type: CAZyme
Location: 20365 - 21648 (+)
Type: CAZyme
Location: 20365 - 21648 (+)
Gene ID: HRGMv2_2460_9_24
Type:
Location: 21739 - 22224 (-)
Type:
Location: 21739 - 22224 (-)
Gene ID: HRGMv2_2460_9_25
Type: pfam
Location: 22228 - 23583 (-)
Type: pfam
Location: 22228 - 23583 (-)
Gene ID: HRGMv2_2460_9_26
Type: TC
Location: 23594 - 25363 (-)
Type: TC
Location: 23594 - 25363 (-)
Gene ID: HRGMv2_2460_9_27
Type: TC
Location: 25710 - 26648 (-)
Type: TC
Location: 25710 - 26648 (-)
Gene ID: HRGMv2_2460_9_28
Type: pfam
Location: 26791 - 27240 (-)
Type: pfam
Location: 26791 - 27240 (-)
Gene ID: HRGMv2_2460_9_29
Type: TC
Location: 27251 - 27988 (-)
Type: TC
Location: 27251 - 27988 (-)
Gene ID: HRGMv2_2460_9_30
Type: TC
Location: 27985 - 28866 (-)
Type: TC
Location: 27985 - 28866 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2460_9_28 | vegan > omnivore | 1.06830 | 0.01924 |