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Cluster: HRGMv2_2460_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2460_75 HRGMv2_2460_75_1 2 1456 + GH13_12
TC HRGMv2_2460_75 HRGMv2_2460_75_2 1708 2580 + 2.A.108.2.3
TC HRGMv2_2460_75 HRGMv2_2460_75_3 2586 3791 + 2.A.108.2.3
TC HRGMv2_2460_75 HRGMv2_2460_75_4 3769 5454 + 2.A.108.2.5
TC HRGMv2_2460_75 HRGMv2_2460_75_5 5462 6169 + 2.A.64.3.1
pfam HRGMv2_2460_75 HRGMv2_2460_75_6 6182 6370 + TatA_B_E
TC HRGMv2_2460_75 HRGMv2_2460_75_7 6771 7487 - 3.A.1.1.28
Gene ID: HRGMv2_2460_75_1
Type: CAZyme
Location: 2 - 1456 (+)
Gene ID: HRGMv2_2460_75_2
Type: TC
Location: 1708 - 2580 (+)
Gene ID: HRGMv2_2460_75_3
Type: TC
Location: 2586 - 3791 (+)
Gene ID: HRGMv2_2460_75_4
Type: TC
Location: 3769 - 5454 (+)
Gene ID: HRGMv2_2460_75_5
Type: TC
Location: 5462 - 6169 (+)
Gene ID: HRGMv2_2460_75_6
Type: pfam
Location: 6182 - 6370 (+)
Gene ID: HRGMv2_2460_75_7
Type: TC
Location: 6771 - 7487 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota
→
Class
Bacilli
→
Order
Lactobacillales
→
Family
Streptococcaceae
→
Genus
Streptococcus
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2460_75_3 vegan > omnivore 1.38377 0.01967
HRGMv2_2460_75_3 vegetarian > omnivore 2.26514 0.00500

🧭 Explore Read Mapping of CGC

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