Cluster: HRGMv2_2460_CGC26
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2460
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2460_58 | HRGMv2_2460_58_9 | 6349 | 7131 | - | CE1 |
| pfam | HRGMv2_2460_58 | HRGMv2_2460_58_10 | 7266 | 8927 | - | Lactamase_B | RMMBL | Lactamase_B_2 | RNase_J_C | RNase_J_b_CASP |
| TC | HRGMv2_2460_58 | HRGMv2_2460_58_11 | 9107 | 9865 | - | 3.A.1.34.1 |
| TC | HRGMv2_2460_58 | HRGMv2_2460_58_12 | 9862 | 10731 | - | 3.A.1.34.1 |
| TC | HRGMv2_2460_58 | HRGMv2_2460_58_13 | 10741 | 11742 | - | 3.A.1.34.1 |
Gene ID: HRGMv2_2460_58_9
Type: CAZyme
Location: 6349 - 7131 (-)
Type: CAZyme
Location: 6349 - 7131 (-)
Gene ID: HRGMv2_2460_58_10
Type: pfam
Location: 7266 - 8927 (-)
Type: pfam
Location: 7266 - 8927 (-)
Gene ID: HRGMv2_2460_58_11
Type: TC
Location: 9107 - 9865 (-)
Type: TC
Location: 9107 - 9865 (-)
Gene ID: HRGMv2_2460_58_12
Type: TC
Location: 9862 - 10731 (-)
Type: TC
Location: 9862 - 10731 (-)
Gene ID: HRGMv2_2460_58_13
Type: TC
Location: 10741 - 11742 (-)
Type: TC
Location: 10741 - 11742 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2460_58_10 | vegan > omnivore | 1.04055 | 0.01967 |
| HRGMv2_2460_58_10 | vegetarian > omnivore | 1.18701 | 0.04358 |
| HRGMv2_2460_58_11 | vegan > omnivore | 1.97793 | 0.01924 |
| HRGMv2_2460_58_11 | vegetarian > omnivore | 2.02326 | 0.04358 |