Cluster: HRGMv2_2460_CGC21
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: HRGMv2_2460
- CGC Family ID: CGCFAM_00215
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2460_35 | HRGMv2_2460_35_1 | 1 | 441 | - | 3.A.1.1.27 |
| TC | HRGMv2_2460_35 | HRGMv2_2460_35_2 | 457 | 1293 | - | 3.A.1.1.27 |
| TC | HRGMv2_2460_35 | HRGMv2_2460_35_3 | 1293 | 2651 | - | 3.A.1.1.27 |
| TC | HRGMv2_2460_35 | HRGMv2_2460_35_4 | 2767 | 4014 | - | 3.A.1.1.27 |
| TF | HRGMv2_2460_35 | HRGMv2_2460_35_5 | 4201 | 5202 | + | LacI |
| CAZyme | HRGMv2_2460_35 | HRGMv2_2460_35_6 | 5455 | 9240 | + | GH77 | GT35 |
Gene ID: HRGMv2_2460_35_1
Type: TC
Location: 1 - 441 (-)
Type: TC
Location: 1 - 441 (-)
Gene ID: HRGMv2_2460_35_2
Type: TC
Location: 457 - 1293 (-)
Type: TC
Location: 457 - 1293 (-)
Gene ID: HRGMv2_2460_35_3
Type: TC
Location: 1293 - 2651 (-)
Type: TC
Location: 1293 - 2651 (-)
Gene ID: HRGMv2_2460_35_4
Type: TC
Location: 2767 - 4014 (-)
Type: TC
Location: 2767 - 4014 (-)
Gene ID: HRGMv2_2460_35_5
Type: TF
Location: 4201 - 5202 (+)
Type: TF
Location: 4201 - 5202 (+)
Gene ID: HRGMv2_2460_35_6
Type: CAZyme
Location: 5455 - 9240 (+)
Type: CAZyme
Location: 5455 - 9240 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2460_35_4 | vegan > omnivore | 1.01063 | 0.01967 |