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Cluster: HRGMv2_2460_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2460_2 HRGMv2_2460_2_20 20216 22498 + GT51
peptidase HRGMv2_2460_2 HRGMv2_2460_2_21 22609 23946 - C01.UPB
TC HRGMv2_2460_2 HRGMv2_2460_2_22 24048 24488 - 9.B.124.1.4
pfam HRGMv2_2460_2 HRGMv2_2460_2_23 24504 25325 - NAD_synthase
pfam HRGMv2_2460_2 HRGMv2_2460_2_24 25337 26791 - NAPRTase | NAPRTase_N | NAPRTase_C
TC HRGMv2_2460_2 HRGMv2_2460_2_25 26975 28198 - 3.A.1.122.13
TC HRGMv2_2460_2 HRGMv2_2460_2_26 28245 28928 - 3.A.1.122.7
Gene ID: HRGMv2_2460_2_20
Type: CAZyme
Location: 20216 - 22498 (+)
Gene ID: HRGMv2_2460_2_21
Type: peptidase
Location: 22609 - 23946 (-)
Gene ID: HRGMv2_2460_2_22
Type: TC
Location: 24048 - 24488 (-)
Gene ID: HRGMv2_2460_2_23
Type: pfam
Location: 24504 - 25325 (-)
Gene ID: HRGMv2_2460_2_24
Type: pfam
Location: 25337 - 26791 (-)
Gene ID: HRGMv2_2460_2_25
Type: TC
Location: 26975 - 28198 (-)
Gene ID: HRGMv2_2460_2_26
Type: TC
Location: 28245 - 28928 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota
→
Class
Bacilli
→
Order
Lactobacillales
→
Family
Streptococcaceae
→
Genus
Streptococcus
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2460_2_25 vegan > omnivore 1.55831 0.01967
HRGMv2_2460_2_26 vegetarian > omnivore 2.27813 0.04358

🧭 Explore Read Mapping of CGC

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