Cluster: HRGMv2_2460_CGC19
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2460
- CGC Family ID: CGCFAM_06129
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2460_30 | HRGMv2_2460_30_1 | 111 | 2666 | - | 2.A.1.3.35 |
| peptidase | HRGMv2_2460_30 | HRGMv2_2460_30_2 | 2663 | 3382 | - | S33.010 |
| TC | HRGMv2_2460_30 | HRGMv2_2460_30_3 | 3579 | 3791 | - | 9.B.44.2.4 |
| TC | HRGMv2_2460_30 | HRGMv2_2460_30_4 | 3928 | 5847 | - | 3.A.1.121.4 |
| pfam | HRGMv2_2460_30 | HRGMv2_2460_30_5 | 5884 | 6519 | - | PRK |
| TC | HRGMv2_2460_30 | HRGMv2_2460_30_6 | 6617 | 7699 | + | 3.A.18.1.1 |
| pfam | HRGMv2_2460_30 | HRGMv2_2460_30_7 | 7752 | 8915 | - | CPSase_L_D2 | ATP-grasp_4 |
| peptidase | HRGMv2_2460_30 | HRGMv2_2460_30_8 | 8961 | 9701 | - | S09.UNW |
| CAZyme | HRGMv2_2460_30 | HRGMv2_2460_30_9 | 9753 | 10580 | - | CE1 |
| pfam | HRGMv2_2460_30 | HRGMv2_2460_30_10 | 10696 | 12129 | - | Aldedh |
| TC | HRGMv2_2460_30 | HRGMv2_2460_30_11 | 12347 | 14080 | - | 8.A.7.1.1 |
Gene ID: HRGMv2_2460_30_1
Type: TC
Location: 111 - 2666 (-)
Type: TC
Location: 111 - 2666 (-)
Gene ID: HRGMv2_2460_30_2
Type: peptidase
Location: 2663 - 3382 (-)
Type: peptidase
Location: 2663 - 3382 (-)
Gene ID: HRGMv2_2460_30_3
Type: TC
Location: 3579 - 3791 (-)
Type: TC
Location: 3579 - 3791 (-)
Gene ID: HRGMv2_2460_30_4
Type: TC
Location: 3928 - 5847 (-)
Type: TC
Location: 3928 - 5847 (-)
Gene ID: HRGMv2_2460_30_5
Type: pfam
Location: 5884 - 6519 (-)
Type: pfam
Location: 5884 - 6519 (-)
Gene ID: HRGMv2_2460_30_6
Type: TC
Location: 6617 - 7699 (+)
Type: TC
Location: 6617 - 7699 (+)
Gene ID: HRGMv2_2460_30_7
Type: pfam
Location: 7752 - 8915 (-)
Type: pfam
Location: 7752 - 8915 (-)
Gene ID: HRGMv2_2460_30_8
Type: peptidase
Location: 8961 - 9701 (-)
Type: peptidase
Location: 8961 - 9701 (-)
Gene ID: HRGMv2_2460_30_9
Type: CAZyme
Location: 9753 - 10580 (-)
Type: CAZyme
Location: 9753 - 10580 (-)
Gene ID: HRGMv2_2460_30_10
Type: pfam
Location: 10696 - 12129 (-)
Type: pfam
Location: 10696 - 12129 (-)
Gene ID: HRGMv2_2460_30_11
Type: TC
Location: 12347 - 14080 (-)
Type: TC
Location: 12347 - 14080 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2460_30_9 | vegan > omnivore | 1.48628 | 0.01967 |
| HRGMv2_2460_30_9 | vegetarian > omnivore | 2.19076 | 0.04358 |