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Cluster: HRGMv2_2460_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2460_19 HRGMv2_2460_19_4 4304 5230 - GT2
pfam HRGMv2_2460_19 HRGMv2_2460_19_5 5227 7008 - RgpF
CAZyme HRGMv2_2460_19 HRGMv2_2460_19_6 7005 8051 - GT2
TC HRGMv2_2460_19 HRGMv2_2460_19_7 8071 9276 - 3.A.1.103.5
pfam HRGMv2_2460_19 HRGMv2_2460_19_8 9276 10085 - ABC2_membrane
CAZyme HRGMv2_2460_19 HRGMv2_2460_19_9 10069 11025 - GT2
CAZyme HRGMv2_2460_19 HRGMv2_2460_19_10 11022 12170 - GT4
pfam HRGMv2_2460_19 HRGMv2_2460_19_11 12281 13132 - 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd
CAZyme HRGMv2_2460_19 HRGMv2_2460_19_12 13194 14120 - GT2
Gene ID: HRGMv2_2460_19_4
Type: CAZyme
Location: 4304 - 5230 (-)
Gene ID: HRGMv2_2460_19_5
Type: pfam
Location: 5227 - 7008 (-)
Gene ID: HRGMv2_2460_19_6
Type: CAZyme
Location: 7005 - 8051 (-)
Gene ID: HRGMv2_2460_19_7
Type: TC
Location: 8071 - 9276 (-)
Gene ID: HRGMv2_2460_19_8
Type: pfam
Location: 9276 - 10085 (-)
Gene ID: HRGMv2_2460_19_9
Type: CAZyme
Location: 10069 - 11025 (-)
Gene ID: HRGMv2_2460_19_10
Type: CAZyme
Location: 11022 - 12170 (-)
Gene ID: HRGMv2_2460_19_11
Type: pfam
Location: 12281 - 13132 (-)
Gene ID: HRGMv2_2460_19_12
Type: CAZyme
Location: 13194 - 14120 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota
→
Class
Bacilli
→
Order
Lactobacillales
→
Family
Streptococcaceae
→
Genus
Streptococcus
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2460_19_11 vegan > omnivore 1.12324 0.01967

🧭 Explore Read Mapping of CGC

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