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Cluster: HRGMv2_2460_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2460_18 HRGMv2_2460_18_3 1488 2903 + 2.A.66.2.16
STP HRGMv2_2460_18 HRGMv2_2460_18_4 2914 4014 + Pyr_redox
pfam HRGMv2_2460_18 HRGMv2_2460_18_5 4011 5003 + Stealth_CR2 | Stealth_CR1
CAZyme HRGMv2_2460_18 HRGMv2_2460_18_6 5014 6066 + GT113
Gene ID: HRGMv2_2460_18_3
Type: TC
Location: 1488 - 2903 (+)
Gene ID: HRGMv2_2460_18_4
Type: STP
Location: 2914 - 4014 (+)
Gene ID: HRGMv2_2460_18_5
Type: pfam
Location: 4011 - 5003 (+)
Gene ID: HRGMv2_2460_18_6
Type: CAZyme
Location: 5014 - 6066 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota
→
Class
Bacilli
→
Order
Lactobacillales
→
Family
Streptococcaceae
→
Genus
Streptococcus
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2460_18_4 vegan > omnivore 1.51048 0.01967

🧭 Explore Read Mapping of CGC

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