Cluster: HRGMv2_2459_CGC20
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2459
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2459_12 | HRGMv2_2459_12_15 | 13332 | 14114 | - | CE1 |
| pfam | HRGMv2_2459_12 | HRGMv2_2459_12_16 | 14239 | 15900 | - | Lactamase_B | RMMBL | Lactamase_B_2 | RNase_J_C | RNase_J_b_CASP |
| TC | HRGMv2_2459_12 | HRGMv2_2459_12_17 | 16080 | 16838 | - | 3.A.1.34.1 |
| TC | HRGMv2_2459_12 | HRGMv2_2459_12_18 | 16835 | 17704 | - | 3.A.1.34.1 |
| TC | HRGMv2_2459_12 | HRGMv2_2459_12_19 | 17714 | 18715 | - | 3.A.1.34.1 |
Gene ID: HRGMv2_2459_12_15
Type: CAZyme
Location: 13332 - 14114 (-)
Type: CAZyme
Location: 13332 - 14114 (-)
Gene ID: HRGMv2_2459_12_16
Type: pfam
Location: 14239 - 15900 (-)
Type: pfam
Location: 14239 - 15900 (-)
Gene ID: HRGMv2_2459_12_17
Type: TC
Location: 16080 - 16838 (-)
Type: TC
Location: 16080 - 16838 (-)
Gene ID: HRGMv2_2459_12_18
Type: TC
Location: 16835 - 17704 (-)
Type: TC
Location: 16835 - 17704 (-)
Gene ID: HRGMv2_2459_12_19
Type: TC
Location: 17714 - 18715 (-)
Type: TC
Location: 17714 - 18715 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus sp000187445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2459_12_16 | vegan > omnivore | 1.05230 | 0.01710 |
| HRGMv2_2459_12_17 | vegan > omnivore | 2.05850 | 0.00694 |
| HRGMv2_2459_12_17 | vegetarian > omnivore | 2.16288 | 0.00749 |