Cluster: HRGMv2_2456_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2456
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2456_2 | HRGMv2_2456_2_142 | 151366 | 152079 | - | GH73 |
| TC | HRGMv2_2456_2 | HRGMv2_2456_2_143 | 152252 | 153259 | + | 2.A.98.1.4 |
| NULL(UNKNOWN) | HRGMv2_2456_2 | HRGMv2_2456_2_144 | 153314 | 153625 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_2456_2 | HRGMv2_2456_2_145 | 153771 | 154169 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2456_2 | HRGMv2_2456_2_146 | 154388 | 155932 | - | 3.A.1.15.3 |
Gene ID: HRGMv2_2456_2_142
Type: CAZyme
Location: 151366 - 152079 (-)
Type: CAZyme
Location: 151366 - 152079 (-)
Gene ID: HRGMv2_2456_2_143
Type: TC
Location: 152252 - 153259 (+)
Type: TC
Location: 152252 - 153259 (+)
Gene ID: HRGMv2_2456_2_144
Type:
Location: 153314 - 153625 (-)
Type:
Location: 153314 - 153625 (-)
Gene ID: HRGMv2_2456_2_145
Type:
Location: 153771 - 154169 (-)
Type:
Location: 153771 - 154169 (-)
Gene ID: HRGMv2_2456_2_146
Type: TC
Location: 154388 - 155932 (-)
Type: TC
Location: 154388 - 155932 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus salivarius
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2456_2_143 | vegan > omnivore | 2.12319 | 0.00773 |
| HRGMv2_2456_2_144 | vegan > omnivore | 3.90746 | 0.00736 |
| HRGMv2_2456_2_144 | vegetarian > omnivore | 3.15691 | 0.02060 |