dbCAN HGM

Cluster: HRGMv2_2456_CGC3

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
CAZyme	HRGMv2_2456_2	HRGMv2_2456_2_1	181	3894	+	CBM41 \| CBM41 \| GH13_12
TC	HRGMv2_2456_2	HRGMv2_2456_2_2	4145	5017	+	2.A.108.2.3
TC	HRGMv2_2456_2	HRGMv2_2456_2_3	5023	6228	+	2.A.108.2.3
TC	HRGMv2_2456_2	HRGMv2_2456_2_4	6206	7891	+	2.A.108.2.5
TC	HRGMv2_2456_2	HRGMv2_2456_2_5	7899	8606	+	2.A.64.3.1
pfam	HRGMv2_2456_2	HRGMv2_2456_2_6	8619	8804	+	TatA_B_E
TC	HRGMv2_2456_2	HRGMv2_2456_2_7	9204	10340	-	3.A.1.1.28
TC	HRGMv2_2456_2	HRGMv2_2456_2_8	10356	11192	-	3.A.1.1.27
TC	HRGMv2_2456_2	HRGMv2_2456_2_9	11192	12550	-	3.A.1.1.27
TC	HRGMv2_2456_2	HRGMv2_2456_2_10	12640	13887	-	3.A.1.1.27
TF	HRGMv2_2456_2	HRGMv2_2456_2_11	14068	15072	+	LacI
CAZyme	HRGMv2_2456_2	HRGMv2_2456_2_12	15326	16825	+	GH77
CAZyme	HRGMv2_2456_2	HRGMv2_2456_2_13	16827	19088	+	GT35

Gene ID: HRGMv2_2456_2_1
Type: CAZyme
Location: 181 - 3894 (+)

Gene ID: HRGMv2_2456_2_2
Type: TC
Location: 4145 - 5017 (+)

Gene ID: HRGMv2_2456_2_3
Type: TC
Location: 5023 - 6228 (+)

Gene ID: HRGMv2_2456_2_4
Type: TC
Location: 6206 - 7891 (+)

Gene ID: HRGMv2_2456_2_5
Type: TC
Location: 7899 - 8606 (+)

Gene ID: HRGMv2_2456_2_6
Type: pfam
Location: 8619 - 8804 (+)

Gene ID: HRGMv2_2456_2_7
Type: TC
Location: 9204 - 10340 (-)

Gene ID: HRGMv2_2456_2_8
Type: TC
Location: 10356 - 11192 (-)

Gene ID: HRGMv2_2456_2_9
Type: TC
Location: 11192 - 12550 (-)

Gene ID: HRGMv2_2456_2_10
Type: TC
Location: 12640 - 13887 (-)

Gene ID: HRGMv2_2456_2_11
Type: TF
Location: 14068 - 15072 (+)

Gene ID: HRGMv2_2456_2_12
Type: CAZyme
Location: 15326 - 16825 (+)

Gene ID: HRGMv2_2456_2_13
Type: CAZyme
Location: 16827 - 19088 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_2456_2_3	vegan > omnivore	1.41307	0.00773
HRGMv2_2456_2_3	vegetarian > omnivore	2.27951	0.00483
HRGMv2_2456_2_10	vegan > omnivore	1.11457	0.00773
HRGMv2_2456_2_13	vegan > omnivore	1.09679	0.00773

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_2456_2_8	vegan > flexitarian	1.96247	0.01273