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Cluster: HRGMv2_2456_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2456_23 HRGMv2_2456_23_7 4659 5342 + 3.A.1.122.7
TC HRGMv2_2456_23 HRGMv2_2456_23_8 5311 6612 + 3.A.1.122.13
pfam HRGMv2_2456_23 HRGMv2_2456_23_9 6797 8251 + NAPRTase | NAPRTase_N | NAPRTase_C
pfam HRGMv2_2456_23 HRGMv2_2456_23_10 8263 9084 + NAD_synthase
TC HRGMv2_2456_23 HRGMv2_2456_23_11 9100 9543 + 9.B.124.1.4
peptidase HRGMv2_2456_23 HRGMv2_2456_23_12 9645 10982 + C01.UPB
CAZyme HRGMv2_2456_23 HRGMv2_2456_23_13 11089 13380 - GT51
Gene ID: HRGMv2_2456_23_7
Type: TC
Location: 4659 - 5342 (+)
Gene ID: HRGMv2_2456_23_8
Type: TC
Location: 5311 - 6612 (+)
Gene ID: HRGMv2_2456_23_9
Type: pfam
Location: 6797 - 8251 (+)
Gene ID: HRGMv2_2456_23_10
Type: pfam
Location: 8263 - 9084 (+)
Gene ID: HRGMv2_2456_23_11
Type: TC
Location: 9100 - 9543 (+)
Gene ID: HRGMv2_2456_23_12
Type: peptidase
Location: 9645 - 10982 (+)
Gene ID: HRGMv2_2456_23_13
Type: CAZyme
Location: 11089 - 13380 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2456_23_7 vegetarian > omnivore 2.23023 0.02060
HRGMv2_2456_23_8 vegan > omnivore 1.50829 0.00773
HRGMv2_2456_23_11 vegan > omnivore 1.14226 0.00773

🧭 Explore Read Mapping of CGC

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