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Cluster: HRGMv2_2456_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2456_9 HRGMv2_2456_9_41 77545 79638 + GT2 | GT8
TC HRGMv2_2456_9 HRGMv2_2456_9_42 79733 80959 + 3.A.5.10.1
TC HRGMv2_2456_9 HRGMv2_2456_9_43 81060 82631 + 3.A.5.10.1
TC HRGMv2_2456_9 HRGMv2_2456_9_44 82618 84156 + 3.A.5.10.1
pfam HRGMv2_2456_9 HRGMv2_2456_9_45 84159 84605 + Sec-ASP3
TC HRGMv2_2456_9 HRGMv2_2456_9_46 84598 86973 + 3.A.5.10.1
CAZyme HRGMv2_2456_9 HRGMv2_2456_9_47 86986 88494 + GT4
Gene ID: HRGMv2_2456_9_41
Type: CAZyme
Location: 77545 - 79638 (+)
Gene ID: HRGMv2_2456_9_42
Type: TC
Location: 79733 - 80959 (+)
Gene ID: HRGMv2_2456_9_43
Type: TC
Location: 81060 - 82631 (+)
Gene ID: HRGMv2_2456_9_44
Type: TC
Location: 82618 - 84156 (+)
Gene ID: HRGMv2_2456_9_45
Type: pfam
Location: 84159 - 84605 (+)
Gene ID: HRGMv2_2456_9_46
Type: TC
Location: 84598 - 86973 (+)
Gene ID: HRGMv2_2456_9_47
Type: CAZyme
Location: 86986 - 88494 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2456_9_42 vegan > omnivore 2.18532 0.00773
HRGMv2_2456_9_44 vegan > omnivore 1.31453 0.00773

🧭 Explore Read Mapping of CGC

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