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Cluster: HRGMv2_2456_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2456_9 HRGMv2_2456_9_21 20212 22626 + 3.A.12.1.1
CAZyme HRGMv2_2456_9 HRGMv2_2456_9_22 22841 25036 + GH13_14
CAZyme HRGMv2_2456_9 HRGMv2_2456_9_23 25206 27086 + CBM48 | GH13_9
pfam HRGMv2_2456_9 HRGMv2_2456_9_24 27277 28419 + NTP_transferase | Hexapep_GlmU
pfam HRGMv2_2456_9 HRGMv2_2456_9_25 28409 29545 + NTP_transferase | Hexapep_GlmU
CAZyme HRGMv2_2456_9 HRGMv2_2456_9_26 29542 30972 + GT5
CAZyme HRGMv2_2456_9 HRGMv2_2456_9_27 31298 33703 + GT35
Gene ID: HRGMv2_2456_9_21
Type: TC
Location: 20212 - 22626 (+)
Gene ID: HRGMv2_2456_9_22
Type: CAZyme
Location: 22841 - 25036 (+)
Gene ID: HRGMv2_2456_9_23
Type: CAZyme
Location: 25206 - 27086 (+)
Gene ID: HRGMv2_2456_9_24
Type: pfam
Location: 27277 - 28419 (+)
Gene ID: HRGMv2_2456_9_25
Type: pfam
Location: 28409 - 29545 (+)
Gene ID: HRGMv2_2456_9_26
Type: CAZyme
Location: 29542 - 30972 (+)
Gene ID: HRGMv2_2456_9_27
Type: CAZyme
Location: 31298 - 33703 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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