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Cluster: HRGMv2_2456_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2456_7 HRGMv2_2456_7_26 32746 33798 - GT113
pfam HRGMv2_2456_7 HRGMv2_2456_7_27 33809 34801 - Stealth_CR2 | Stealth_CR1
STP HRGMv2_2456_7 HRGMv2_2456_7_28 34798 35898 - Pyr_redox
TC HRGMv2_2456_7 HRGMv2_2456_7_29 35909 37324 - 2.A.66.2.16
NULL(UNKNOWN) HRGMv2_2456_7 HRGMv2_2456_7_30 37374 38540 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2456_7 HRGMv2_2456_7_31 38569 39561 - GT2
CAZyme HRGMv2_2456_7 HRGMv2_2456_7_32 39571 40551 - GT2
pfam HRGMv2_2456_7 HRGMv2_2456_7_33 40571 41209 - DUF1919
pfam HRGMv2_2456_7 HRGMv2_2456_7_34 41231 42232 - Stealth_CR2 | Stealth_CR1 | Stealth_CR3
CAZyme HRGMv2_2456_7 HRGMv2_2456_7_35 42251 43396 - GT4
CAZyme HRGMv2_2456_7 HRGMv2_2456_7_36 43399 44571 - GT4
TC HRGMv2_2456_7 HRGMv2_2456_7_37 44604 45971 - 9.B.18.1.2
TC HRGMv2_2456_7 HRGMv2_2456_7_38 46028 46768 - 8.A.3.2.3
TC HRGMv2_2456_7 HRGMv2_2456_7_39 46778 47470 - 8.A.3.2.3
Gene ID: HRGMv2_2456_7_26
Type: CAZyme
Location: 32746 - 33798 (-)
Gene ID: HRGMv2_2456_7_27
Type: pfam
Location: 33809 - 34801 (-)
Gene ID: HRGMv2_2456_7_28
Type: STP
Location: 34798 - 35898 (-)
Gene ID: HRGMv2_2456_7_29
Type: TC
Location: 35909 - 37324 (-)
Gene ID: HRGMv2_2456_7_30
Type:
Location: 37374 - 38540 (-)
Gene ID: HRGMv2_2456_7_31
Type: CAZyme
Location: 38569 - 39561 (-)
Gene ID: HRGMv2_2456_7_32
Type: CAZyme
Location: 39571 - 40551 (-)
Gene ID: HRGMv2_2456_7_33
Type: pfam
Location: 40571 - 41209 (-)
Gene ID: HRGMv2_2456_7_34
Type: pfam
Location: 41231 - 42232 (-)
Gene ID: HRGMv2_2456_7_35
Type: CAZyme
Location: 42251 - 43396 (-)
Gene ID: HRGMv2_2456_7_36
Type: CAZyme
Location: 43399 - 44571 (-)
Gene ID: HRGMv2_2456_7_37
Type: TC
Location: 44604 - 45971 (-)
Gene ID: HRGMv2_2456_7_38
Type: TC
Location: 46028 - 46768 (-)
Gene ID: HRGMv2_2456_7_39
Type: TC
Location: 46778 - 47470 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2456_7_28 vegan > omnivore 1.10269 0.00773

🧭 Explore Read Mapping of CGC

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