Cluster: HRGMv2_2456_CGC11
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 9
- Substrate:
- Genome ID: HRGMv2_2456
- CGC Family ID: CGCFAM_00003
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2456_6 | HRGMv2_2456_6_19 | 19643 | 20845 | - | 3.A.1.103.5 |
| pfam | HRGMv2_2456_6 | HRGMv2_2456_6_20 | 20845 | 21651 | - | ABC2_membrane |
| CAZyme | HRGMv2_2456_6 | HRGMv2_2456_6_21 | 21652 | 22590 | - | GT2 |
| CAZyme | HRGMv2_2456_6 | HRGMv2_2456_6_22 | 22587 | 23735 | - | GT4 |
| CAZyme | HRGMv2_2456_6 | HRGMv2_2456_6_23 | 23902 | 25149 | - | GT4 |
| pfam | HRGMv2_2456_6 | HRGMv2_2456_6_24 | 25153 | 26388 | - | DUF2142 |
| CAZyme | HRGMv2_2456_6 | HRGMv2_2456_6_25 | 26447 | 29398 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_2456_6 | HRGMv2_2456_6_26 | 29579 | 30799 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2456_6 | HRGMv2_2456_6_27 | 30829 | 31611 | - | GT2 |
| pfam | HRGMv2_2456_6 | HRGMv2_2456_6_28 | 31608 | 31943 | - | DUF2304 |
| CAZyme | HRGMv2_2456_6 | HRGMv2_2456_6_29 | 31949 | 32638 | - | GT2 |
| CAZyme | HRGMv2_2456_6 | HRGMv2_2456_6_30 | 32761 | 33189 | - | GT2 |
| CAZyme | HRGMv2_2456_6 | HRGMv2_2456_6_31 | 33231 | 34223 | - | GT8 |
| NULL(UNKNOWN) | HRGMv2_2456_6 | HRGMv2_2456_6_32 | 34223 | 35548 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2456_6 | HRGMv2_2456_6_33 | 35925 | 36776 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| TC | HRGMv2_2456_6 | HRGMv2_2456_6_34 | 36861 | 38336 | - | 3.A.7.19.1 |
| CAZyme | HRGMv2_2456_6 | HRGMv2_2456_6_35 | 38341 | 39267 | - | GT2 |
Gene ID: HRGMv2_2456_6_19
Type: TC
Location: 19643 - 20845 (-)
Type: TC
Location: 19643 - 20845 (-)
Gene ID: HRGMv2_2456_6_20
Type: pfam
Location: 20845 - 21651 (-)
Type: pfam
Location: 20845 - 21651 (-)
Gene ID: HRGMv2_2456_6_21
Type: CAZyme
Location: 21652 - 22590 (-)
Type: CAZyme
Location: 21652 - 22590 (-)
Gene ID: HRGMv2_2456_6_22
Type: CAZyme
Location: 22587 - 23735 (-)
Type: CAZyme
Location: 22587 - 23735 (-)
Gene ID: HRGMv2_2456_6_23
Type: CAZyme
Location: 23902 - 25149 (-)
Type: CAZyme
Location: 23902 - 25149 (-)
Gene ID: HRGMv2_2456_6_24
Type: pfam
Location: 25153 - 26388 (-)
Type: pfam
Location: 25153 - 26388 (-)
Gene ID: HRGMv2_2456_6_25
Type: CAZyme
Location: 26447 - 29398 (-)
Type: CAZyme
Location: 26447 - 29398 (-)
Gene ID: HRGMv2_2456_6_26
Type:
Location: 29579 - 30799 (-)
Type:
Location: 29579 - 30799 (-)
Gene ID: HRGMv2_2456_6_27
Type: CAZyme
Location: 30829 - 31611 (-)
Type: CAZyme
Location: 30829 - 31611 (-)
Gene ID: HRGMv2_2456_6_28
Type: pfam
Location: 31608 - 31943 (-)
Type: pfam
Location: 31608 - 31943 (-)
Gene ID: HRGMv2_2456_6_29
Type: CAZyme
Location: 31949 - 32638 (-)
Type: CAZyme
Location: 31949 - 32638 (-)
Gene ID: HRGMv2_2456_6_30
Type: CAZyme
Location: 32761 - 33189 (-)
Type: CAZyme
Location: 32761 - 33189 (-)
Gene ID: HRGMv2_2456_6_31
Type: CAZyme
Location: 33231 - 34223 (-)
Type: CAZyme
Location: 33231 - 34223 (-)
Gene ID: HRGMv2_2456_6_32
Type:
Location: 34223 - 35548 (-)
Type:
Location: 34223 - 35548 (-)
Gene ID: HRGMv2_2456_6_33
Type: pfam
Location: 35925 - 36776 (-)
Type: pfam
Location: 35925 - 36776 (-)
Gene ID: HRGMv2_2456_6_34
Type: TC
Location: 36861 - 38336 (-)
Type: TC
Location: 36861 - 38336 (-)
Gene ID: HRGMv2_2456_6_35
Type: CAZyme
Location: 38341 - 39267 (-)
Type: CAZyme
Location: 38341 - 39267 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus salivarius
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2456_6_33 | vegan > omnivore | 1.22625 | 0.00773 |