Cluster: HRGMv2_2456_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2456
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2456_1 | HRGMv2_2456_1_13 | 10007 | 10789 | - | CE1 |
| pfam | HRGMv2_2456_1 | HRGMv2_2456_1_14 | 10924 | 12585 | - | Lactamase_B | RMMBL | Lactamase_B_2 | RNase_J_C | RNase_J_b_CASP |
| TC | HRGMv2_2456_1 | HRGMv2_2456_1_15 | 12765 | 13523 | - | 3.A.1.34.1 |
| TC | HRGMv2_2456_1 | HRGMv2_2456_1_16 | 13520 | 14389 | - | 3.A.1.34.1 |
| TC | HRGMv2_2456_1 | HRGMv2_2456_1_17 | 14399 | 15400 | - | 3.A.1.34.1 |
Gene ID: HRGMv2_2456_1_13
Type: CAZyme
Location: 10007 - 10789 (-)
Type: CAZyme
Location: 10007 - 10789 (-)
Gene ID: HRGMv2_2456_1_14
Type: pfam
Location: 10924 - 12585 (-)
Type: pfam
Location: 10924 - 12585 (-)
Gene ID: HRGMv2_2456_1_15
Type: TC
Location: 12765 - 13523 (-)
Type: TC
Location: 12765 - 13523 (-)
Gene ID: HRGMv2_2456_1_16
Type: TC
Location: 13520 - 14389 (-)
Type: TC
Location: 13520 - 14389 (-)
Gene ID: HRGMv2_2456_1_17
Type: TC
Location: 14399 - 15400 (-)
Type: TC
Location: 14399 - 15400 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus salivarius
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2456_1_14 | vegetarian > omnivore | 1.35350 | 0.02060 |
| HRGMv2_2456_1_15 | vegan > omnivore | 1.62890 | 0.00773 |
| HRGMv2_2456_1_15 | vegetarian > omnivore | 1.98825 | 0.00483 |