dbCAN Logo

Cluster: HRGMv2_2454_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2454_1 HRGMv2_2454_1_52 53656 54915 + 3.A.1.19.4
pfam HRGMv2_2454_1 HRGMv2_2454_1_53 54917 55780 + BPD_transp_1
pfam HRGMv2_2454_1 HRGMv2_2454_1_54 55792 56598 + BPD_transp_1
TC HRGMv2_2454_1 HRGMv2_2454_1_55 56615 57646 + 3.A.1.11.7
pfam HRGMv2_2454_1 HRGMv2_2454_1_56 57708 58592 + IU_nuc_hydro
CAZyme HRGMv2_2454_1 HRGMv2_2454_1_57 58596 59276 + GT2
TC HRGMv2_2454_1 HRGMv2_2454_1_58 59314 60090 + 3.A.1.103.6
TC HRGMv2_2454_1 HRGMv2_2454_1_59 60099 60833 + 3.A.1.103.1
NULL(UNKNOWN) HRGMv2_2454_1 HRGMv2_2454_1_60 60844 61422 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2454_1 HRGMv2_2454_1_61 61458 63929 + GT2 | GT2
TC HRGMv2_2454_1 HRGMv2_2454_1_62 64038 65315 + 9.B.18.1.1
CAZyme HRGMv2_2454_1 HRGMv2_2454_1_63 65387 66325 + GT2
Gene ID: HRGMv2_2454_1_52
Type: TC
Location: 53656 - 54915 (+)
Gene ID: HRGMv2_2454_1_53
Type: pfam
Location: 54917 - 55780 (+)
Gene ID: HRGMv2_2454_1_54
Type: pfam
Location: 55792 - 56598 (+)
Gene ID: HRGMv2_2454_1_55
Type: TC
Location: 56615 - 57646 (+)
Gene ID: HRGMv2_2454_1_56
Type: pfam
Location: 57708 - 58592 (+)
Gene ID: HRGMv2_2454_1_57
Type: CAZyme
Location: 58596 - 59276 (+)
Gene ID: HRGMv2_2454_1_58
Type: TC
Location: 59314 - 60090 (+)
Gene ID: HRGMv2_2454_1_59
Type: TC
Location: 60099 - 60833 (+)
Gene ID: HRGMv2_2454_1_60
Type:
Location: 60844 - 61422 (+)
Gene ID: HRGMv2_2454_1_61
Type: CAZyme
Location: 61458 - 63929 (+)
Gene ID: HRGMv2_2454_1_62
Type: TC
Location: 64038 - 65315 (+)
Gene ID: HRGMv2_2454_1_63
Type: CAZyme
Location: 65387 - 66325 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List