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Cluster: HRGMv2_2453_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2453_2 HRGMv2_2453_2_219 229267 231810 + GT4
NULL(UNKNOWN) HRGMv2_2453_2 HRGMv2_2453_2_220 231822 233678 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2453_2 HRGMv2_2453_2_221 233671 236352 + GT2
NULL(UNKNOWN) HRGMv2_2453_2 HRGMv2_2453_2_222 236368 236865 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2453_2 HRGMv2_2453_2_223 236888 240544 + Glyphos_transf | Glyphos_transf
TC HRGMv2_2453_2 HRGMv2_2453_2_224 240632 241408 + 3.A.1.103.1
TC HRGMv2_2453_2 HRGMv2_2453_2_225 241418 242158 + 3.A.1.103.5
pfam HRGMv2_2453_2 HRGMv2_2453_2_226 242188 242598 + CTP_transf_like
pfam HRGMv2_2453_2 HRGMv2_2453_2_227 242711 243892 + Glyphos_transf
CAZyme HRGMv2_2453_2 HRGMv2_2453_2_228 243923 244858 + GT2
Gene ID: HRGMv2_2453_2_219
Type: CAZyme
Location: 229267 - 231810 (+)
Gene ID: HRGMv2_2453_2_220
Type:
Location: 231822 - 233678 (+)
Gene ID: HRGMv2_2453_2_221
Type: CAZyme
Location: 233671 - 236352 (+)
Gene ID: HRGMv2_2453_2_222
Type:
Location: 236368 - 236865 (+)
Gene ID: HRGMv2_2453_2_223
Type: pfam
Location: 236888 - 240544 (+)
Gene ID: HRGMv2_2453_2_224
Type: TC
Location: 240632 - 241408 (+)
Gene ID: HRGMv2_2453_2_225
Type: TC
Location: 241418 - 242158 (+)
Gene ID: HRGMv2_2453_2_226
Type: pfam
Location: 242188 - 242598 (+)
Gene ID: HRGMv2_2453_2_227
Type: pfam
Location: 242711 - 243892 (+)
Gene ID: HRGMv2_2453_2_228
Type: CAZyme
Location: 243923 - 244858 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Anaerostipes
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2453_2_224 vegan > omnivore 1.83662 0.00224
HRGMv2_2453_2_225 vegan > omnivore 1.14162 0.00224
HRGMv2_2453_2_226 vegan > omnivore 1.24836 0.00224

🧭 Explore Read Mapping of CGC

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