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Cluster: HRGMv2_2453_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2453_11 HRGMv2_2453_11_27 26837 27949 + CE9
CAZyme HRGMv2_2453_11 HRGMv2_2453_11_28 28067 28840 + CE4
pfam HRGMv2_2453_11 HRGMv2_2453_11_29 29284 30021 + DUF4430
NULL(UNKNOWN) HRGMv2_2453_11 HRGMv2_2453_11_30 30022 30858 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2453_11 HRGMv2_2453_11_31 30845 32398 + 3.A.1.32.2
TC HRGMv2_2453_11 HRGMv2_2453_11_32 32392 33024 + 3.A.1.32.2
NULL(UNKNOWN) HRGMv2_2453_11 HRGMv2_2453_11_33 33045 34916 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2453_11 HRGMv2_2453_11_34 35122 37239 + Gln-synt_C | GSIII_N | Gln-synt_C-ter
CAZyme HRGMv2_2453_11 HRGMv2_2453_11_35 37416 38186 + CE4
pfam HRGMv2_2453_11 HRGMv2_2453_11_36 38244 38846 + MMR_HSR1 | FeoB_N
TF HRGMv2_2453_11 HRGMv2_2453_11_37 38847 39380 - 0041905
TC HRGMv2_2453_11 HRGMv2_2453_11_38 39503 40126 + 9.A.11.1.1
TC HRGMv2_2453_11 HRGMv2_2453_11_39 40113 40529 + 9.A.11.1.1
TC HRGMv2_2453_11 HRGMv2_2453_11_40 40552 41016 + 9.A.11.1.1
TC HRGMv2_2453_11 HRGMv2_2453_11_41 41013 42023 + 9.A.11.1.1
pfam HRGMv2_2453_11 HRGMv2_2453_11_42 42023 42379 + SpoVAC_SpoVAEB
CAZyme HRGMv2_2453_11 HRGMv2_2453_11_43 42412 44949 - GT51
Gene ID: HRGMv2_2453_11_27
Type: CAZyme
Location: 26837 - 27949 (+)
Gene ID: HRGMv2_2453_11_28
Type: CAZyme
Location: 28067 - 28840 (+)
Gene ID: HRGMv2_2453_11_29
Type: pfam
Location: 29284 - 30021 (+)
Gene ID: HRGMv2_2453_11_30
Type:
Location: 30022 - 30858 (+)
Gene ID: HRGMv2_2453_11_31
Type: TC
Location: 30845 - 32398 (+)
Gene ID: HRGMv2_2453_11_32
Type: TC
Location: 32392 - 33024 (+)
Gene ID: HRGMv2_2453_11_33
Type:
Location: 33045 - 34916 (+)
Gene ID: HRGMv2_2453_11_34
Type: pfam
Location: 35122 - 37239 (+)
Gene ID: HRGMv2_2453_11_35
Type: CAZyme
Location: 37416 - 38186 (+)
Gene ID: HRGMv2_2453_11_36
Type: pfam
Location: 38244 - 38846 (+)
Gene ID: HRGMv2_2453_11_37
Type: TF
Location: 38847 - 39380 (-)
Gene ID: HRGMv2_2453_11_38
Type: TC
Location: 39503 - 40126 (+)
Gene ID: HRGMv2_2453_11_39
Type: TC
Location: 40113 - 40529 (+)
Gene ID: HRGMv2_2453_11_40
Type: TC
Location: 40552 - 41016 (+)
Gene ID: HRGMv2_2453_11_41
Type: TC
Location: 41013 - 42023 (+)
Gene ID: HRGMv2_2453_11_42
Type: pfam
Location: 42023 - 42379 (+)
Gene ID: HRGMv2_2453_11_43
Type: CAZyme
Location: 42412 - 44949 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Anaerostipes
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2453_11_27 vegan > omnivore 1.31859 0.00224
HRGMv2_2453_11_28 vegan > omnivore 1.72648 0.00224
HRGMv2_2453_11_32 vegan > omnivore 1.58172 0.00224
HRGMv2_2453_11_38 vegan > omnivore 1.99682 0.00224
HRGMv2_2453_11_39 vegan > omnivore 1.78178 0.00224
HRGMv2_2453_11_40 vegan > omnivore 2.08999 0.00224
HRGMv2_2453_11_43 vegan > omnivore 1.22775 0.00224

🧭 Explore Read Mapping of CGC

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