Cluster: HRGMv2_2451_CGC30
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2451
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2451_34 | HRGMv2_2451_34_7 | 9702 | 10565 | + | 3.A.1.7.5 |
| TC | HRGMv2_2451_34 | HRGMv2_2451_34_8 | 10555 | 11511 | + | 3.A.1.7.5 |
| TC | HRGMv2_2451_34 | HRGMv2_2451_34_9 | 11727 | 12485 | + | 3.A.1.7.5 |
| pfam | HRGMv2_2451_34 | HRGMv2_2451_34_10 | 12560 | 13222 | + | PhoU | PhoU |
| pfam | HRGMv2_2451_34 | HRGMv2_2451_34_11 | 13420 | 16122 | + | Flg_new | LRR_5 | DUF6273 |
| CAZyme | HRGMv2_2451_34 | HRGMv2_2451_34_12 | 16265 | 17569 | - | CE12 |
Gene ID: HRGMv2_2451_34_7
Type: TC
Location: 9702 - 10565 (+)
Type: TC
Location: 9702 - 10565 (+)
Gene ID: HRGMv2_2451_34_8
Type: TC
Location: 10555 - 11511 (+)
Type: TC
Location: 10555 - 11511 (+)
Gene ID: HRGMv2_2451_34_9
Type: TC
Location: 11727 - 12485 (+)
Type: TC
Location: 11727 - 12485 (+)
Gene ID: HRGMv2_2451_34_10
Type: pfam
Location: 12560 - 13222 (+)
Type: pfam
Location: 12560 - 13222 (+)
Gene ID: HRGMv2_2451_34_11
Type: pfam
Location: 13420 - 16122 (+)
Type: pfam
Location: 13420 - 16122 (+)
Gene ID: HRGMv2_2451_34_12
Type: CAZyme
Location: 16265 - 17569 (-)
Type: CAZyme
Location: 16265 - 17569 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2451_34_9 | vegan > omnivore | 1.01395 | 0.03728 |
| HRGMv2_2451_34_9 | vegan > vegetarian | 2.07169 | 0.03426 |