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Cluster: HRGMv2_2451_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2451_30 HRGMv2_2451_30_22 23625 25484 + 3.A.16.1.3
CAZyme HRGMv2_2451_30 HRGMv2_2451_30_23 25791 30353 + PL1 | PL1
pfam HRGMv2_2451_30 HRGMv2_2451_30_24 30439 30867 - NDK
TF HRGMv2_2451_30 HRGMv2_2451_30_25 31426 31902 + MarR
TC HRGMv2_2451_30 HRGMv2_2451_30_26 31895 34213 + 3.A.1.135.6
TC HRGMv2_2451_30 HRGMv2_2451_30_27 34206 36047 + 3.A.1.135.6
STP HRGMv2_2451_30 HRGMv2_2451_30_28 36227 36445 + HMA
TC HRGMv2_2451_30 HRGMv2_2451_30_29 36592 38454 + 3.A.3.6.10
TF HRGMv2_2451_30 HRGMv2_2451_30_30 38572 38943 + HTH_5
CAZyme HRGMv2_2451_30 HRGMv2_2451_30_31 39155 40207 + CE2
TC HRGMv2_2451_30 HRGMv2_2451_30_32 40459 42090 + 2.A.36.6.3
Gene ID: HRGMv2_2451_30_22
Type: TC
Location: 23625 - 25484 (+)
Gene ID: HRGMv2_2451_30_23
Type: CAZyme
Location: 25791 - 30353 (+)
Gene ID: HRGMv2_2451_30_24
Type: pfam
Location: 30439 - 30867 (-)
Gene ID: HRGMv2_2451_30_25
Type: TF
Location: 31426 - 31902 (+)
Gene ID: HRGMv2_2451_30_26
Type: TC
Location: 31895 - 34213 (+)
Gene ID: HRGMv2_2451_30_27
Type: TC
Location: 34206 - 36047 (+)
Gene ID: HRGMv2_2451_30_28
Type: STP
Location: 36227 - 36445 (+)
Gene ID: HRGMv2_2451_30_29
Type: TC
Location: 36592 - 38454 (+)
Gene ID: HRGMv2_2451_30_30
Type: TF
Location: 38572 - 38943 (+)
Gene ID: HRGMv2_2451_30_31
Type: CAZyme
Location: 39155 - 40207 (+)
Gene ID: HRGMv2_2451_30_32
Type: TC
Location: 40459 - 42090 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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