Cluster: HRGMv2_2451_CGC19
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2451
- CGC Family ID: CGCFAM_00193
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2451_15 | HRGMv2_2451_15_55 | 52262 | 53242 | + | 3.A.1.1.20 |
| TC | HRGMv2_2451_15 | HRGMv2_2451_15_56 | 53246 | 54103 | + | 3.A.1.1.18 |
| pfam | HRGMv2_2451_15 | HRGMv2_2451_15_57 | 54168 | 55343 | + | GlcNAc_2-epim |
| CAZyme | HRGMv2_2451_15 | HRGMv2_2451_15_58 | 55333 | 56508 | + | GH130_1 |
| CAZyme | HRGMv2_2451_15 | HRGMv2_2451_15_59 | 56578 | 57600 | + | GH130_2 |
| CAZyme | HRGMv2_2451_15 | HRGMv2_2451_15_60 | 57894 | 60197 | + | GH1 |
Gene ID: HRGMv2_2451_15_55
Type: TC
Location: 52262 - 53242 (+)
Type: TC
Location: 52262 - 53242 (+)
Gene ID: HRGMv2_2451_15_56
Type: TC
Location: 53246 - 54103 (+)
Type: TC
Location: 53246 - 54103 (+)
Gene ID: HRGMv2_2451_15_57
Type: pfam
Location: 54168 - 55343 (+)
Type: pfam
Location: 54168 - 55343 (+)
Gene ID: HRGMv2_2451_15_58
Type: CAZyme
Location: 55333 - 56508 (+)
Type: CAZyme
Location: 55333 - 56508 (+)
Gene ID: HRGMv2_2451_15_59
Type: CAZyme
Location: 56578 - 57600 (+)
Type: CAZyme
Location: 56578 - 57600 (+)
Gene ID: HRGMv2_2451_15_60
Type: CAZyme
Location: 57894 - 60197 (+)
Type: CAZyme
Location: 57894 - 60197 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2451_15_59 | vegetarian > vegan | 1.18397 | 0.03778 |