Cluster: HRGMv2_2446_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2446
- CGC Family ID: CGCFAM_01513
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2446_8 | HRGMv2_2446_8_19 | 17065 | 18435 | + | 2.A.66.1.25 |
| NULL(UNKNOWN) | HRGMv2_2446_8 | HRGMv2_2446_8_20 | 18516 | 20363 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2446_8 | HRGMv2_2446_8_21 | 20394 | 22319 | - | GT2 |
| TC | HRGMv2_2446_8 | HRGMv2_2446_8_22 | 22324 | 24108 | - | 9.B.34.1.4 |
| STP | HRGMv2_2446_8 | HRGMv2_2446_8_23 | 24092 | 24883 | - | EAL |
| TC | HRGMv2_2446_8 | HRGMv2_2446_8_24 | 25027 | 26868 | - | 3.A.1.135.9 |
| TC | HRGMv2_2446_8 | HRGMv2_2446_8_25 | 26873 | 28609 | - | 3.A.1.135.9 |
Gene ID: HRGMv2_2446_8_19
Type: TC
Location: 17065 - 18435 (+)
Type: TC
Location: 17065 - 18435 (+)
Gene ID: HRGMv2_2446_8_20
Type:
Location: 18516 - 20363 (-)
Type:
Location: 18516 - 20363 (-)
Gene ID: HRGMv2_2446_8_21
Type: CAZyme
Location: 20394 - 22319 (-)
Type: CAZyme
Location: 20394 - 22319 (-)
Gene ID: HRGMv2_2446_8_22
Type: TC
Location: 22324 - 24108 (-)
Type: TC
Location: 22324 - 24108 (-)
Gene ID: HRGMv2_2446_8_23
Type: STP
Location: 24092 - 24883 (-)
Type: STP
Location: 24092 - 24883 (-)
Gene ID: HRGMv2_2446_8_24
Type: TC
Location: 25027 - 26868 (-)
Type: TC
Location: 25027 - 26868 (-)
Gene ID: HRGMv2_2446_8_25
Type: TC
Location: 26873 - 28609 (-)
Type: TC
Location: 26873 - 28609 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter norwichensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.