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Cluster: HRGMv2_2446_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2446_6 HRGMv2_2446_6_1 106 3912 - CBM13 | GH93
CAZyme HRGMv2_2446_6 HRGMv2_2446_6_2 4053 6440 - GH93
CAZyme HRGMv2_2446_6 HRGMv2_2446_6_3 6676 8619 - GH120
pfam HRGMv2_2446_6 HRGMv2_2446_6_4 8707 9678 - DUF4340
TF HRGMv2_2446_6 HRGMv2_2446_6_5 9682 11274 - HTH_AraC | HTH_AraC
TC HRGMv2_2446_6 HRGMv2_2446_6_6 11267 13072 - 9.B.33.1.1
TC HRGMv2_2446_6 HRGMv2_2446_6_7 13166 14005 - 3.A.1.1.18
TC HRGMv2_2446_6 HRGMv2_2446_6_8 14009 14911 - 3.A.1.1.7
STP HRGMv2_2446_6 HRGMv2_2446_6_9 14979 16295 - SBP_bac_1
CAZyme HRGMv2_2446_6 HRGMv2_2446_6_10 16421 18037 - CBM91 | GH43_11
Gene ID: HRGMv2_2446_6_1
Type: CAZyme
Location: 106 - 3912 (-)
Gene ID: HRGMv2_2446_6_2
Type: CAZyme
Location: 4053 - 6440 (-)
Gene ID: HRGMv2_2446_6_3
Type: CAZyme
Location: 6676 - 8619 (-)
Gene ID: HRGMv2_2446_6_4
Type: pfam
Location: 8707 - 9678 (-)
Gene ID: HRGMv2_2446_6_5
Type: TF
Location: 9682 - 11274 (-)
Gene ID: HRGMv2_2446_6_6
Type: TC
Location: 11267 - 13072 (-)
Gene ID: HRGMv2_2446_6_7
Type: TC
Location: 13166 - 14005 (-)
Gene ID: HRGMv2_2446_6_8
Type: TC
Location: 14009 - 14911 (-)
Gene ID: HRGMv2_2446_6_9
Type: STP
Location: 14979 - 16295 (-)
Gene ID: HRGMv2_2446_6_10
Type: CAZyme
Location: 16421 - 18037 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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