Cluster: HRGMv2_2446_CGC6
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2446
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2446_5 | HRGMv2_2446_5_42 | 45534 | 47420 | - | 3.D.1.5.1 |
| TC | HRGMv2_2446_5 | HRGMv2_2446_5_43 | 47425 | 47898 | - | 3.D.1.5.1 |
| NULL(UNKNOWN) | HRGMv2_2446_5 | HRGMv2_2446_5_44 | 48019 | 48189 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2446_5 | HRGMv2_2446_5_45 | 48161 | 48988 | - | Amidase_3 |
| CAZyme | HRGMv2_2446_5 | HRGMv2_2446_5_46 | 49150 | 49965 | + | GH25 |
| TF | HRGMv2_2446_5 | HRGMv2_2446_5_47 | 50255 | 50713 | + | MarR |
| TC | HRGMv2_2446_5 | HRGMv2_2446_5_48 | 50796 | 53318 | - | 3.A.9.1.2 |
Gene ID: HRGMv2_2446_5_42
Type: TC
Location: 45534 - 47420 (-)
Type: TC
Location: 45534 - 47420 (-)
Gene ID: HRGMv2_2446_5_43
Type: TC
Location: 47425 - 47898 (-)
Type: TC
Location: 47425 - 47898 (-)
Gene ID: HRGMv2_2446_5_44
Type:
Location: 48019 - 48189 (-)
Type:
Location: 48019 - 48189 (-)
Gene ID: HRGMv2_2446_5_45
Type: pfam
Location: 48161 - 48988 (-)
Type: pfam
Location: 48161 - 48988 (-)
Gene ID: HRGMv2_2446_5_46
Type: CAZyme
Location: 49150 - 49965 (+)
Type: CAZyme
Location: 49150 - 49965 (+)
Gene ID: HRGMv2_2446_5_47
Type: TF
Location: 50255 - 50713 (+)
Type: TF
Location: 50255 - 50713 (+)
Gene ID: HRGMv2_2446_5_48
Type: TC
Location: 50796 - 53318 (-)
Type: TC
Location: 50796 - 53318 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter norwichensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.