Cluster: HRGMv2_2446_CGC30
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2446
- CGC Family ID: CGCFAM_03055
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2446_39 | HRGMv2_2446_39_23 | 28700 | 30571 | + | GH13_11 |
| pfam | HRGMv2_2446_39 | HRGMv2_2446_39_24 | 30525 | 31061 | + | DUF5662 |
| pfam | HRGMv2_2446_39 | HRGMv2_2446_39_25 | 31087 | 31731 | + | His_Phos_1 |
| TC | HRGMv2_2446_39 | HRGMv2_2446_39_26 | 31778 | 32713 | - | 3.A.1.121.4 |
Gene ID: HRGMv2_2446_39_23
Type: CAZyme
Location: 28700 - 30571 (+)
Type: CAZyme
Location: 28700 - 30571 (+)
Gene ID: HRGMv2_2446_39_24
Type: pfam
Location: 30525 - 31061 (+)
Type: pfam
Location: 30525 - 31061 (+)
Gene ID: HRGMv2_2446_39_25
Type: pfam
Location: 31087 - 31731 (+)
Type: pfam
Location: 31087 - 31731 (+)
Gene ID: HRGMv2_2446_39_26
Type: TC
Location: 31778 - 32713 (-)
Type: TC
Location: 31778 - 32713 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter norwichensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.