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Cluster: HRGMv2_2446_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2446_20 HRGMv2_2446_20_1 57 5630 - CBM35 | GH39
CAZyme HRGMv2_2446_20 HRGMv2_2446_20_2 5813 10546 - CBM35
CAZyme HRGMv2_2446_20 HRGMv2_2446_20_3 10588 12573 - GH31_4
TC HRGMv2_2446_20 HRGMv2_2446_20_4 12611 13459 - 3.A.1.1.44
TC HRGMv2_2446_20 HRGMv2_2446_20_5 13459 14358 - 3.A.1.1.19
TC HRGMv2_2446_20 HRGMv2_2446_20_6 14434 15663 - 3.A.1.1.44
TF HRGMv2_2446_20 HRGMv2_2446_20_7 15848 17371 - HTH_AraC | HTH_AraC
TC HRGMv2_2446_20 HRGMv2_2446_20_8 17368 19161 - 9.B.33.1.1
pfam HRGMv2_2446_20 HRGMv2_2446_20_9 19346 21460 - Gln-synt_C | GSIII_N | Gln-synt_C-ter
pfam HRGMv2_2446_20 HRGMv2_2446_20_10 21652 22515 - F_bP_aldolase
TC HRGMv2_2446_20 HRGMv2_2446_20_11 22704 24077 - 2.A.66.1.32
CAZyme HRGMv2_2446_20 HRGMv2_2446_20_12 24502 31230 - CBM35 | GH28
CAZyme HRGMv2_2446_20 HRGMv2_2446_20_13 31529 36925 - CBM32
pfam HRGMv2_2446_20 HRGMv2_2446_20_14 37109 42577 - F5_F8_type_C | F5_F8_type_C | Big_2 | Big_4 | FIVAR | FIVAR | FIVAR | Flg_new_2 | F5_F8_type_C_2 | F5_F8_type_C_2
CAZyme HRGMv2_2446_20 HRGMv2_2446_20_15 42574 44562 - GH31_4
TC HRGMv2_2446_20 HRGMv2_2446_20_16 44578 45423 - 3.A.1.1.41
TC HRGMv2_2446_20 HRGMv2_2446_20_17 45424 46326 - 3.A.1.1.7
TC HRGMv2_2446_20 HRGMv2_2446_20_18 46394 47617 - 3.A.1.1.44
TF HRGMv2_2446_20 HRGMv2_2446_20_19 47744 49285 - HTH_AraC | HTH_AraC
TC HRGMv2_2446_20 HRGMv2_2446_20_20 49266 51074 - 8.A.59.2.1
Gene ID: HRGMv2_2446_20_1
Type: CAZyme
Location: 57 - 5630 (-)
Gene ID: HRGMv2_2446_20_2
Type: CAZyme
Location: 5813 - 10546 (-)
Gene ID: HRGMv2_2446_20_3
Type: CAZyme
Location: 10588 - 12573 (-)
Gene ID: HRGMv2_2446_20_4
Type: TC
Location: 12611 - 13459 (-)
Gene ID: HRGMv2_2446_20_5
Type: TC
Location: 13459 - 14358 (-)
Gene ID: HRGMv2_2446_20_6
Type: TC
Location: 14434 - 15663 (-)
Gene ID: HRGMv2_2446_20_7
Type: TF
Location: 15848 - 17371 (-)
Gene ID: HRGMv2_2446_20_8
Type: TC
Location: 17368 - 19161 (-)
Gene ID: HRGMv2_2446_20_9
Type: pfam
Location: 19346 - 21460 (-)
Gene ID: HRGMv2_2446_20_10
Type: pfam
Location: 21652 - 22515 (-)
Gene ID: HRGMv2_2446_20_11
Type: TC
Location: 22704 - 24077 (-)
Gene ID: HRGMv2_2446_20_12
Type: CAZyme
Location: 24502 - 31230 (-)
Gene ID: HRGMv2_2446_20_13
Type: CAZyme
Location: 31529 - 36925 (-)
Gene ID: HRGMv2_2446_20_14
Type: pfam
Location: 37109 - 42577 (-)
Gene ID: HRGMv2_2446_20_15
Type: CAZyme
Location: 42574 - 44562 (-)
Gene ID: HRGMv2_2446_20_16
Type: TC
Location: 44578 - 45423 (-)
Gene ID: HRGMv2_2446_20_17
Type: TC
Location: 45424 - 46326 (-)
Gene ID: HRGMv2_2446_20_18
Type: TC
Location: 46394 - 47617 (-)
Gene ID: HRGMv2_2446_20_19
Type: TF
Location: 47744 - 49285 (-)
Gene ID: HRGMv2_2446_20_20
Type: TC
Location: 49266 - 51074 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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