Cluster: HRGMv2_2446_CGC19
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2446
- CGC Family ID: CGCFAM_02071
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2446_19 | HRGMv2_2446_19_19 | 19554 | 20897 | - | 2.A.66.1.33 |
| NULL(UNKNOWN) | HRGMv2_2446_19 | HRGMv2_2446_19_20 | 21051 | 21482 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2446_19 | HRGMv2_2446_19_21 | 21556 | 26487 | - | CBM35 | CBM35 | GH39 |
| CAZyme | HRGMv2_2446_19 | HRGMv2_2446_19_22 | 26594 | 28696 | - | GH36 |
| TC | HRGMv2_2446_19 | HRGMv2_2446_19_23 | 28747 | 29601 | - | 3.A.1.1.45 |
| TC | HRGMv2_2446_19 | HRGMv2_2446_19_24 | 29601 | 30491 | - | 3.A.1.1.42 |
Gene ID: HRGMv2_2446_19_19
Type: TC
Location: 19554 - 20897 (-)
Type: TC
Location: 19554 - 20897 (-)
Gene ID: HRGMv2_2446_19_20
Type:
Location: 21051 - 21482 (+)
Type:
Location: 21051 - 21482 (+)
Gene ID: HRGMv2_2446_19_21
Type: CAZyme
Location: 21556 - 26487 (-)
Type: CAZyme
Location: 21556 - 26487 (-)
Gene ID: HRGMv2_2446_19_22
Type: CAZyme
Location: 26594 - 28696 (-)
Type: CAZyme
Location: 26594 - 28696 (-)
Gene ID: HRGMv2_2446_19_23
Type: TC
Location: 28747 - 29601 (-)
Type: TC
Location: 28747 - 29601 (-)
Gene ID: HRGMv2_2446_19_24
Type: TC
Location: 29601 - 30491 (-)
Type: TC
Location: 29601 - 30491 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter norwichensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.