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Cluster: HRGMv2_2446_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2446_14 HRGMv2_2446_14_20 26596 27384 - 9.B.158.1.1
sulfatase HRGMv2_2446_14 HRGMv2_2446_14_21 27432 28163 - S1_9
pfam HRGMv2_2446_14 HRGMv2_2446_14_22 28424 29164 - PseudoU_synth_1 | PseudoU_synth_1
TC HRGMv2_2446_14 HRGMv2_2446_14_23 29211 30035 - 3.A.1.26.7
TC HRGMv2_2446_14 HRGMv2_2446_14_24 30028 30876 - 3.A.1.26.7
TC HRGMv2_2446_14 HRGMv2_2446_14_25 30861 31712 - 3.A.1.26.7
pfam HRGMv2_2446_14 HRGMv2_2446_14_26 31970 33286 - Glyco_hydro_43 | FIVAR | Flg_new | Flg_new_2
CAZyme HRGMv2_2446_14 HRGMv2_2446_14_27 33677 37624 - GH141
TF HRGMv2_2446_14 HRGMv2_2446_14_28 37764 39338 - HTH_AraC
TC HRGMv2_2446_14 HRGMv2_2446_14_29 39310 41154 - 8.A.59.2.1
STP HRGMv2_2446_14 HRGMv2_2446_14_30 41132 42415 - SBP_bac_1
CAZyme HRGMv2_2446_14 HRGMv2_2446_14_31 42689 46006 - GH146
CAZyme HRGMv2_2446_14 HRGMv2_2446_14_32 46151 51484 - CBM32 | GH95
pfam HRGMv2_2446_14 HRGMv2_2446_14_33 51746 52606 - YitT_membrane | DUF2179
TC HRGMv2_2446_14 HRGMv2_2446_14_34 52919 54289 + 2.A.66.1.32
Gene ID: HRGMv2_2446_14_20
Type: TC
Location: 26596 - 27384 (-)
Gene ID: HRGMv2_2446_14_21
Type: sulfatase
Location: 27432 - 28163 (-)
Gene ID: HRGMv2_2446_14_22
Type: pfam
Location: 28424 - 29164 (-)
Gene ID: HRGMv2_2446_14_23
Type: TC
Location: 29211 - 30035 (-)
Gene ID: HRGMv2_2446_14_24
Type: TC
Location: 30028 - 30876 (-)
Gene ID: HRGMv2_2446_14_25
Type: TC
Location: 30861 - 31712 (-)
Gene ID: HRGMv2_2446_14_26
Type: pfam
Location: 31970 - 33286 (-)
Gene ID: HRGMv2_2446_14_27
Type: CAZyme
Location: 33677 - 37624 (-)
Gene ID: HRGMv2_2446_14_28
Type: TF
Location: 37764 - 39338 (-)
Gene ID: HRGMv2_2446_14_29
Type: TC
Location: 39310 - 41154 (-)
Gene ID: HRGMv2_2446_14_30
Type: STP
Location: 41132 - 42415 (-)
Gene ID: HRGMv2_2446_14_31
Type: CAZyme
Location: 42689 - 46006 (-)
Gene ID: HRGMv2_2446_14_32
Type: CAZyme
Location: 46151 - 51484 (-)
Gene ID: HRGMv2_2446_14_33
Type: pfam
Location: 51746 - 52606 (-)
Gene ID: HRGMv2_2446_14_34
Type: TC
Location: 52919 - 54289 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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