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Cluster: HRGMv2_2446_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2446_12 HRGMv2_2446_12_12 21293 22855 - 4.C.1.1.1
pfam HRGMv2_2446_12 HRGMv2_2446_12_13 23106 24101 + GFO_IDH_MocA
STP HRGMv2_2446_12 HRGMv2_2446_12_14 24186 25079 - PfkB
TC HRGMv2_2446_12 HRGMv2_2446_12_15 25165 25959 - 3.A.1.23.2
TC HRGMv2_2446_12 HRGMv2_2446_12_16 25949 26809 - 3.A.1.32.3
pfam HRGMv2_2446_12 HRGMv2_2446_12_17 26824 27621 - CbiQ
TC HRGMv2_2446_12 HRGMv2_2446_12_18 27621 28208 - 2.A.88.6.1
pfam HRGMv2_2446_12 HRGMv2_2446_12_19 28250 29239 - IU_nuc_hydro
TF HRGMv2_2446_12 HRGMv2_2446_12_20 29232 31160 - LacI
CAZyme HRGMv2_2446_12 HRGMv2_2446_12_21 31469 32803 - GH3
CAZyme HRGMv2_2446_12 HRGMv2_2446_12_22 32805 35345 - GH3
Gene ID: HRGMv2_2446_12_12
Type: TC
Location: 21293 - 22855 (-)
Gene ID: HRGMv2_2446_12_13
Type: pfam
Location: 23106 - 24101 (+)
Gene ID: HRGMv2_2446_12_14
Type: STP
Location: 24186 - 25079 (-)
Gene ID: HRGMv2_2446_12_15
Type: TC
Location: 25165 - 25959 (-)
Gene ID: HRGMv2_2446_12_16
Type: TC
Location: 25949 - 26809 (-)
Gene ID: HRGMv2_2446_12_17
Type: pfam
Location: 26824 - 27621 (-)
Gene ID: HRGMv2_2446_12_18
Type: TC
Location: 27621 - 28208 (-)
Gene ID: HRGMv2_2446_12_19
Type: pfam
Location: 28250 - 29239 (-)
Gene ID: HRGMv2_2446_12_20
Type: TF
Location: 29232 - 31160 (-)
Gene ID: HRGMv2_2446_12_21
Type: CAZyme
Location: 31469 - 32803 (-)
Gene ID: HRGMv2_2446_12_22
Type: CAZyme
Location: 32805 - 35345 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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