Cluster: HRGMv2_2446_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: host glycan/beta-glucan
- Genome ID: HRGMv2_2446
- CGC Family ID: CGCFAM_00020
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2446_11 | HRGMv2_2446_11_34 | 34594 | 36069 | - | GH1 |
| TC | HRGMv2_2446_11 | HRGMv2_2446_11_35 | 36095 | 37996 | - | 4.A.1.2.11 |
| pfam | HRGMv2_2446_11 | HRGMv2_2446_11_36 | 38151 | 38990 | - | PRD | PRD | CAT_RBD |
| NULL(UNKNOWN) | HRGMv2_2446_11 | HRGMv2_2446_11_37 | 39334 | 39879 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2446_11 | HRGMv2_2446_11_38 | 39901 | 41787 | - | 3.A.3.6.10 |
Gene ID: HRGMv2_2446_11_34
Type: CAZyme
Location: 34594 - 36069 (-)
Type: CAZyme
Location: 34594 - 36069 (-)
Gene ID: HRGMv2_2446_11_35
Type: TC
Location: 36095 - 37996 (-)
Type: TC
Location: 36095 - 37996 (-)
Gene ID: HRGMv2_2446_11_36
Type: pfam
Location: 38151 - 38990 (-)
Type: pfam
Location: 38151 - 38990 (-)
Gene ID: HRGMv2_2446_11_37
Type:
Location: 39334 - 39879 (+)
Type:
Location: 39334 - 39879 (+)
Gene ID: HRGMv2_2446_11_38
Type: TC
Location: 39901 - 41787 (-)
Type: TC
Location: 39901 - 41787 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter norwichensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.