Cluster: HRGMv2_2446_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2446
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2446_1 | HRGMv2_2446_1_26 | 26808 | 29345 | - | 3.A.3.5.15 |
| pfam | HRGMv2_2446_1 | HRGMv2_2446_1_27 | 29384 | 29698 | - | Trns_repr_metal |
| pfam | HRGMv2_2446_1 | HRGMv2_2446_1_28 | 29934 | 33077 | - | FtsX | FtsX |
| TC | HRGMv2_2446_1 | HRGMv2_2446_1_29 | 33071 | 33775 | - | 3.A.1.122.7 |
| pfam | HRGMv2_2446_1 | HRGMv2_2446_1_30 | 33936 | 35186 | - | MFS_1 | ATG22 |
| pfam | HRGMv2_2446_1 | HRGMv2_2446_1_31 | 35289 | 36110 | - | Zn_dep_PLPC |
| CAZyme | HRGMv2_2446_1 | HRGMv2_2446_1_32 | 37179 | 40016 | - | GH3 |
Gene ID: HRGMv2_2446_1_26
Type: TC
Location: 26808 - 29345 (-)
Type: TC
Location: 26808 - 29345 (-)
Gene ID: HRGMv2_2446_1_27
Type: pfam
Location: 29384 - 29698 (-)
Type: pfam
Location: 29384 - 29698 (-)
Gene ID: HRGMv2_2446_1_28
Type: pfam
Location: 29934 - 33077 (-)
Type: pfam
Location: 29934 - 33077 (-)
Gene ID: HRGMv2_2446_1_29
Type: TC
Location: 33071 - 33775 (-)
Type: TC
Location: 33071 - 33775 (-)
Gene ID: HRGMv2_2446_1_30
Type: pfam
Location: 33936 - 35186 (-)
Type: pfam
Location: 33936 - 35186 (-)
Gene ID: HRGMv2_2446_1_31
Type: pfam
Location: 35289 - 36110 (-)
Type: pfam
Location: 35289 - 36110 (-)
Gene ID: HRGMv2_2446_1_32
Type: CAZyme
Location: 37179 - 40016 (-)
Type: CAZyme
Location: 37179 - 40016 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter norwichensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.