Cluster: HRGMv2_2438_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2438
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2438_9 | HRGMv2_2438_9_9 | 11406 | 12266 | - | 3.A.1.1.27 |
| TC | HRGMv2_2438_9 | HRGMv2_2438_9_10 | 12266 | 13672 | - | 3.A.1.1.27 |
| STP | HRGMv2_2438_9 | HRGMv2_2438_9_11 | 13808 | 15088 | - | SBP_bac_1 |
| TC | HRGMv2_2438_9 | HRGMv2_2438_9_12 | 15201 | 16184 | - | 9.B.18.1.2 |
| NULL(UNKNOWN) | HRGMv2_2438_9 | HRGMv2_2438_9_13 | 16184 | 16861 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2438_9 | HRGMv2_2438_9_14 | 16944 | 21542 | - | CBM74 | GH13_28 |
Gene ID: HRGMv2_2438_9_9
Type: TC
Location: 11406 - 12266 (-)
Type: TC
Location: 11406 - 12266 (-)
Gene ID: HRGMv2_2438_9_10
Type: TC
Location: 12266 - 13672 (-)
Type: TC
Location: 12266 - 13672 (-)
Gene ID: HRGMv2_2438_9_11
Type: STP
Location: 13808 - 15088 (-)
Type: STP
Location: 13808 - 15088 (-)
Gene ID: HRGMv2_2438_9_12
Type: TC
Location: 15201 - 16184 (-)
Type: TC
Location: 15201 - 16184 (-)
Gene ID: HRGMv2_2438_9_13
Type:
Location: 16184 - 16861 (-)
Type:
Location: 16184 - 16861 (-)
Gene ID: HRGMv2_2438_9_14
Type: CAZyme
Location: 16944 - 21542 (-)
Type: CAZyme
Location: 16944 - 21542 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.