Cluster: HRGMv2_2438_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2438
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2438_2 | HRGMv2_2438_2_18 | 14343 | 15146 | + | 2.A.78.1.1 |
| TC | HRGMv2_2438_2 | HRGMv2_2438_2_19 | 15143 | 15469 | + | 2.A.78.1.1 |
| NULL(UNKNOWN) | HRGMv2_2438_2 | HRGMv2_2438_2_20 | 16160 | 16564 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2438_2 | HRGMv2_2438_2_21 | 16817 | 17464 | + | 9.B.31.1.1 |
| CAZyme | HRGMv2_2438_2 | HRGMv2_2438_2_22 | 17421 | 18581 | + | GT28 |
| STP | HRGMv2_2438_2 | HRGMv2_2438_2_23 | 19056 | 20108 | + | Fer4 |
| TC | HRGMv2_2438_2 | HRGMv2_2438_2_24 | 20237 | 21076 | - | 8.A.5.1.4 |
Gene ID: HRGMv2_2438_2_18
Type: TC
Location: 14343 - 15146 (+)
Type: TC
Location: 14343 - 15146 (+)
Gene ID: HRGMv2_2438_2_19
Type: TC
Location: 15143 - 15469 (+)
Type: TC
Location: 15143 - 15469 (+)
Gene ID: HRGMv2_2438_2_20
Type:
Location: 16160 - 16564 (+)
Type:
Location: 16160 - 16564 (+)
Gene ID: HRGMv2_2438_2_21
Type: TC
Location: 16817 - 17464 (+)
Type: TC
Location: 16817 - 17464 (+)
Gene ID: HRGMv2_2438_2_22
Type: CAZyme
Location: 17421 - 18581 (+)
Type: CAZyme
Location: 17421 - 18581 (+)
Gene ID: HRGMv2_2438_2_23
Type: STP
Location: 19056 - 20108 (+)
Type: STP
Location: 19056 - 20108 (+)
Gene ID: HRGMv2_2438_2_24
Type: TC
Location: 20237 - 21076 (-)
Type: TC
Location: 20237 - 21076 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.