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Cluster: HRGMv2_2438_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2438_29 HRGMv2_2438_29_33 34329 35219 + 3.A.1.1.45
TC HRGMv2_2438_29 HRGMv2_2438_29_34 35235 36065 + 3.A.1.1.45
TF HRGMv2_2438_29 HRGMv2_2438_29_35 36067 36894 - HTH_AraC
pfam HRGMv2_2438_29 HRGMv2_2438_29_36 37016 38221 + Lipase_GDSL | Lipase_GDSL_2
CAZyme HRGMv2_2438_29 HRGMv2_2438_29_37 38238 39035 + CE1
CAZyme HRGMv2_2438_29 HRGMv2_2438_29_38 39032 40147 + CE1
pfam HRGMv2_2438_29 HRGMv2_2438_29_39 40260 41135 + Shikimate_dh_N | SDH_C
TC HRGMv2_2438_29 HRGMv2_2438_29_40 41171 42070 + 2.A.7.3.52
Gene ID: HRGMv2_2438_29_33
Type: TC
Location: 34329 - 35219 (+)
Gene ID: HRGMv2_2438_29_34
Type: TC
Location: 35235 - 36065 (+)
Gene ID: HRGMv2_2438_29_35
Type: TF
Location: 36067 - 36894 (-)
Gene ID: HRGMv2_2438_29_36
Type: pfam
Location: 37016 - 38221 (+)
Gene ID: HRGMv2_2438_29_37
Type: CAZyme
Location: 38238 - 39035 (+)
Gene ID: HRGMv2_2438_29_38
Type: CAZyme
Location: 39032 - 40147 (+)
Gene ID: HRGMv2_2438_29_39
Type: pfam
Location: 40260 - 41135 (+)
Gene ID: HRGMv2_2438_29_40
Type: TC
Location: 41171 - 42070 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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