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Cluster: HRGMv2_2437_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2437_12 HRGMv2_2437_12_31 33649 35211 - 2.A.66.1.40
pfam HRGMv2_2437_12 HRGMv2_2437_12_32 35233 36411 - PS_pyruv_trans
pfam HRGMv2_2437_12 HRGMv2_2437_12_33 36408 37760 - Wzy_C
CAZyme HRGMv2_2437_12 HRGMv2_2437_12_34 37757 38638 - GT2
CAZyme HRGMv2_2437_12 HRGMv2_2437_12_35 38640 39410 - GT32
CAZyme HRGMv2_2437_12 HRGMv2_2437_12_36 39414 40403 - GT2
STP HRGMv2_2437_12 HRGMv2_2437_12_37 40418 41074 - SIS
pfam HRGMv2_2437_12 HRGMv2_2437_12_38 41146 42150 - GHMP_kinases_N | GHMP_kinases_C
CAZyme HRGMv2_2437_12 HRGMv2_2437_12_39 42169 43320 - GT94
CAZyme HRGMv2_2437_12 HRGMv2_2437_12_40 43576 44337 - GT2
NULL(UNKNOWN) HRGMv2_2437_12 HRGMv2_2437_12_41 44358 45182 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2437_12 HRGMv2_2437_12_42 45184 45900 - 9.B.18.1.3
STP HRGMv2_2437_12 HRGMv2_2437_12_43 45909 47153 - Aminotran_1_2
TC HRGMv2_2437_12 HRGMv2_2437_12_44 47167 49131 - 9.B.18.2.1
Gene ID: HRGMv2_2437_12_31
Type: TC
Location: 33649 - 35211 (-)
Gene ID: HRGMv2_2437_12_32
Type: pfam
Location: 35233 - 36411 (-)
Gene ID: HRGMv2_2437_12_33
Type: pfam
Location: 36408 - 37760 (-)
Gene ID: HRGMv2_2437_12_34
Type: CAZyme
Location: 37757 - 38638 (-)
Gene ID: HRGMv2_2437_12_35
Type: CAZyme
Location: 38640 - 39410 (-)
Gene ID: HRGMv2_2437_12_36
Type: CAZyme
Location: 39414 - 40403 (-)
Gene ID: HRGMv2_2437_12_37
Type: STP
Location: 40418 - 41074 (-)
Gene ID: HRGMv2_2437_12_38
Type: pfam
Location: 41146 - 42150 (-)
Gene ID: HRGMv2_2437_12_39
Type: CAZyme
Location: 42169 - 43320 (-)
Gene ID: HRGMv2_2437_12_40
Type: CAZyme
Location: 43576 - 44337 (-)
Gene ID: HRGMv2_2437_12_41
Type:
Location: 44358 - 45182 (-)
Gene ID: HRGMv2_2437_12_42
Type: TC
Location: 45184 - 45900 (-)
Gene ID: HRGMv2_2437_12_43
Type: STP
Location: 45909 - 47153 (-)
Gene ID: HRGMv2_2437_12_44
Type: TC
Location: 47167 - 49131 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
TWA4
→
Species
TWA4 sp902496125

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2437_12_43 vegan > omnivore 1.40697 0.04112

🧭 Explore Read Mapping of CGC

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