Cluster: HRGMv2_2399_CGC4
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2399
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2399_2 | HRGMv2_2399_2_33 | 45441 | 46673 | - | 3.A.1.122.2 |
| pfam | HRGMv2_2399_2 | HRGMv2_2399_2_34 | 46683 | 48305 | - | HlyD_3 |
| TC | HRGMv2_2399_2 | HRGMv2_2399_2_35 | 48298 | 49062 | - | 3.A.1.122.7 |
| pfam | HRGMv2_2399_2 | HRGMv2_2399_2_36 | 49440 | 51515 | + | Sulfatase |
| CAZyme | HRGMv2_2399_2 | HRGMv2_2399_2_37 | 51654 | 54716 | - | GH2 |
| TC | HRGMv2_2399_2 | HRGMv2_2399_2_38 | 54816 | 55676 | - | 3.A.1.1.4 |
| TC | HRGMv2_2399_2 | HRGMv2_2399_2_39 | 55669 | 56568 | - | 3.A.1.1.4 |
| TC | HRGMv2_2399_2 | HRGMv2_2399_2_40 | 56690 | 58051 | - | 3.A.1.1.4 |
| TF | HRGMv2_2399_2 | HRGMv2_2399_2_41 | 58278 | 59222 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_2399_2 | HRGMv2_2399_2_42 | 60703 | 62613 | + | 9.B.34.1.2 |
| pfam | HRGMv2_2399_2 | HRGMv2_2399_2_43 | 62597 | 63562 | - | Amidase_3 |
| CAZyme | HRGMv2_2399_2 | HRGMv2_2399_2_44 | 63581 | 65314 | - | GH73 |
| CAZyme | HRGMv2_2399_2 | HRGMv2_2399_2_45 | 65378 | 69613 | - | GH73 |
Gene ID: HRGMv2_2399_2_33
Type: TC
Location: 45441 - 46673 (-)
Type: TC
Location: 45441 - 46673 (-)
Gene ID: HRGMv2_2399_2_34
Type: pfam
Location: 46683 - 48305 (-)
Type: pfam
Location: 46683 - 48305 (-)
Gene ID: HRGMv2_2399_2_35
Type: TC
Location: 48298 - 49062 (-)
Type: TC
Location: 48298 - 49062 (-)
Gene ID: HRGMv2_2399_2_36
Type: pfam
Location: 49440 - 51515 (+)
Type: pfam
Location: 49440 - 51515 (+)
Gene ID: HRGMv2_2399_2_37
Type: CAZyme
Location: 51654 - 54716 (-)
Type: CAZyme
Location: 51654 - 54716 (-)
Gene ID: HRGMv2_2399_2_38
Type: TC
Location: 54816 - 55676 (-)
Type: TC
Location: 54816 - 55676 (-)
Gene ID: HRGMv2_2399_2_39
Type: TC
Location: 55669 - 56568 (-)
Type: TC
Location: 55669 - 56568 (-)
Gene ID: HRGMv2_2399_2_40
Type: TC
Location: 56690 - 58051 (-)
Type: TC
Location: 56690 - 58051 (-)
Gene ID: HRGMv2_2399_2_41
Type: TF
Location: 58278 - 59222 (-)
Type: TF
Location: 58278 - 59222 (-)
Gene ID: HRGMv2_2399_2_42
Type: TC
Location: 60703 - 62613 (+)
Type: TC
Location: 60703 - 62613 (+)
Gene ID: HRGMv2_2399_2_43
Type: pfam
Location: 62597 - 63562 (-)
Type: pfam
Location: 62597 - 63562 (-)
Gene ID: HRGMv2_2399_2_44
Type: CAZyme
Location: 63581 - 65314 (-)
Type: CAZyme
Location: 63581 - 65314 (-)
Gene ID: HRGMv2_2399_2_45
Type: CAZyme
Location: 65378 - 69613 (-)
Type: CAZyme
Location: 65378 - 69613 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia_B
Species
Roseburia_B zhanii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.