Cluster: HRGMv2_2399_CGC34
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2399
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2399_40 | HRGMv2_2399_40_1 | 270 | 4784 | + | GH127 |
| CAZyme | HRGMv2_2399_40 | HRGMv2_2399_40_2 | 4861 | 8847 | + | GH51_2 |
| pfam | HRGMv2_2399_40 | HRGMv2_2399_40_3 | 9058 | 10905 | + | Flg_new |
| TC | HRGMv2_2399_40 | HRGMv2_2399_40_4 | 10932 | 12785 | + | 8.A.59.2.1 |
| TF | HRGMv2_2399_40 | HRGMv2_2399_40_5 | 12745 | 14265 | + | HTH_AraC |
| TC | HRGMv2_2399_40 | HRGMv2_2399_40_6 | 14283 | 15527 | + | 3.A.1.1.44 |
| CAZyme | HRGMv2_2399_40 | HRGMv2_2399_40_7 | 15565 | 19395 | + | GH146 |
Gene ID: HRGMv2_2399_40_1
Type: CAZyme
Location: 270 - 4784 (+)
Type: CAZyme
Location: 270 - 4784 (+)
Gene ID: HRGMv2_2399_40_2
Type: CAZyme
Location: 4861 - 8847 (+)
Type: CAZyme
Location: 4861 - 8847 (+)
Gene ID: HRGMv2_2399_40_3
Type: pfam
Location: 9058 - 10905 (+)
Type: pfam
Location: 9058 - 10905 (+)
Gene ID: HRGMv2_2399_40_4
Type: TC
Location: 10932 - 12785 (+)
Type: TC
Location: 10932 - 12785 (+)
Gene ID: HRGMv2_2399_40_5
Type: TF
Location: 12745 - 14265 (+)
Type: TF
Location: 12745 - 14265 (+)
Gene ID: HRGMv2_2399_40_6
Type: TC
Location: 14283 - 15527 (+)
Type: TC
Location: 14283 - 15527 (+)
Gene ID: HRGMv2_2399_40_7
Type: CAZyme
Location: 15565 - 19395 (+)
Type: CAZyme
Location: 15565 - 19395 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia_B
Species
Roseburia_B zhanii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.