Cluster: HRGMv2_2399_CGC28
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2399
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2399_23 | HRGMv2_2399_23_3 | 3132 | 4529 | - | 2.A.2.3.1 |
| pfam | HRGMv2_2399_23 | HRGMv2_2399_23_4 | 4725 | 5870 | + | Fe-ADH | Fe-ADH_2 | ADH_Fe_C |
| pfam | HRGMv2_2399_23 | HRGMv2_2399_23_5 | 6198 | 6425 | - | SpoIIID |
| CAZyme | HRGMv2_2399_23 | HRGMv2_2399_23_6 | 6532 | 8751 | - | GH36 |
| CAZyme | HRGMv2_2399_23 | HRGMv2_2399_23_7 | 9311 | 11440 | - | CBM34 | GH13_39 |
| TC | HRGMv2_2399_23 | HRGMv2_2399_23_8 | 12083 | 13894 | - | 3.A.16.1.1 |
Gene ID: HRGMv2_2399_23_3
Type: TC
Location: 3132 - 4529 (-)
Type: TC
Location: 3132 - 4529 (-)
Gene ID: HRGMv2_2399_23_4
Type: pfam
Location: 4725 - 5870 (+)
Type: pfam
Location: 4725 - 5870 (+)
Gene ID: HRGMv2_2399_23_5
Type: pfam
Location: 6198 - 6425 (-)
Type: pfam
Location: 6198 - 6425 (-)
Gene ID: HRGMv2_2399_23_6
Type: CAZyme
Location: 6532 - 8751 (-)
Type: CAZyme
Location: 6532 - 8751 (-)
Gene ID: HRGMv2_2399_23_7
Type: CAZyme
Location: 9311 - 11440 (-)
Type: CAZyme
Location: 9311 - 11440 (-)
Gene ID: HRGMv2_2399_23_8
Type: TC
Location: 12083 - 13894 (-)
Type: TC
Location: 12083 - 13894 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia_B
Species
Roseburia_B zhanii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.