Cluster: HRGMv2_2399_CGC19
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2399
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2399_12 | HRGMv2_2399_12_6 | 3977 | 5362 | + | 2.A.40.7.2 |
| CAZyme | HRGMv2_2399_12 | HRGMv2_2399_12_7 | 5521 | 6441 | + | GT8 |
| pfam | HRGMv2_2399_12 | HRGMv2_2399_12_8 | 6416 | 9712 | + | LRR_5 |
| TF | HRGMv2_2399_12 | HRGMv2_2399_12_9 | 9737 | 12169 | + | GerE |
| TC | HRGMv2_2399_12 | HRGMv2_2399_12_10 | 12190 | 15720 | + | 8.A.59.4.1 |
Gene ID: HRGMv2_2399_12_6
Type: TC
Location: 3977 - 5362 (+)
Type: TC
Location: 3977 - 5362 (+)
Gene ID: HRGMv2_2399_12_7
Type: CAZyme
Location: 5521 - 6441 (+)
Type: CAZyme
Location: 5521 - 6441 (+)
Gene ID: HRGMv2_2399_12_8
Type: pfam
Location: 6416 - 9712 (+)
Type: pfam
Location: 6416 - 9712 (+)
Gene ID: HRGMv2_2399_12_9
Type: TF
Location: 9737 - 12169 (+)
Type: TF
Location: 9737 - 12169 (+)
Gene ID: HRGMv2_2399_12_10
Type: TC
Location: 12190 - 15720 (+)
Type: TC
Location: 12190 - 15720 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia_B
Species
Roseburia_B zhanii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.