Cluster: HRGMv2_2399_CGC13
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2399
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2399_5 | HRGMv2_2399_5_60 | 78384 | 79628 | + | PL9_2 |
| pfam | HRGMv2_2399_5 | HRGMv2_2399_5_61 | 80780 | 86158 | + | Big_2 | Big_2 | Big_4 | FIVAR | FIVAR | FIVAR | FIVAR | FIVAR | Laminin_G_3 | Laminin_G_3 | Laminin_G_3 | aBig_2 | aBig_2 | aBig_2 |
| pfam | HRGMv2_2399_5 | HRGMv2_2399_5_62 | 86450 | 87919 | + | Mur_ligase | Mur_ligase_C | Mur_ligase_M |
| TC | HRGMv2_2399_5 | HRGMv2_2399_5_63 | 87941 | 90175 | + | 3.A.11.3.1 |
Gene ID: HRGMv2_2399_5_60
Type: CAZyme
Location: 78384 - 79628 (+)
Type: CAZyme
Location: 78384 - 79628 (+)
Gene ID: HRGMv2_2399_5_61
Type: pfam
Location: 80780 - 86158 (+)
Type: pfam
Location: 80780 - 86158 (+)
Gene ID: HRGMv2_2399_5_62
Type: pfam
Location: 86450 - 87919 (+)
Type: pfam
Location: 86450 - 87919 (+)
Gene ID: HRGMv2_2399_5_63
Type: TC
Location: 87941 - 90175 (+)
Type: TC
Location: 87941 - 90175 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia_B
Species
Roseburia_B zhanii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.