Cluster: HRGMv2_2393_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2393
- CGC Family ID: CGCFAM_04932
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2393_40 | HRGMv2_2393_40_22 | 24182 | 25537 | - | 2.A.3.6.1 |
| TF | HRGMv2_2393_40 | HRGMv2_2393_40_23 | 25846 | 26325 | + | MarR |
| pfam | HRGMv2_2393_40 | HRGMv2_2393_40_24 | 26477 | 27106 | - | NAD_binding_10 |
| CAZyme | HRGMv2_2393_40 | HRGMv2_2393_40_25 | 27510 | 28601 | - | GH170 |
| pfam | HRGMv2_2393_40 | HRGMv2_2393_40_26 | 28680 | 29543 | - | YitT_membrane | DUF2179 |
| TC | HRGMv2_2393_40 | HRGMv2_2393_40_27 | 29540 | 30274 | - | 9.B.158.1.1 |
Gene ID: HRGMv2_2393_40_22
Type: TC
Location: 24182 - 25537 (-)
Type: TC
Location: 24182 - 25537 (-)
Gene ID: HRGMv2_2393_40_23
Type: TF
Location: 25846 - 26325 (+)
Type: TF
Location: 25846 - 26325 (+)
Gene ID: HRGMv2_2393_40_24
Type: pfam
Location: 26477 - 27106 (-)
Type: pfam
Location: 26477 - 27106 (-)
Gene ID: HRGMv2_2393_40_25
Type: CAZyme
Location: 27510 - 28601 (-)
Type: CAZyme
Location: 27510 - 28601 (-)
Gene ID: HRGMv2_2393_40_26
Type: pfam
Location: 28680 - 29543 (-)
Type: pfam
Location: 28680 - 29543 (-)
Gene ID: HRGMv2_2393_40_27
Type: TC
Location: 29540 - 30274 (-)
Type: TC
Location: 29540 - 30274 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium_A
Species
Lachnoclostridium_A sp002160755
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.