Cluster: HRGMv2_2393_CGC7
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2393
- CGC Family ID: CGCFAM_00064
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2393_35 | HRGMv2_2393_35_43 | 46413 | 47768 | - | 2.A.3.6.1 |
| TC | HRGMv2_2393_35 | HRGMv2_2393_35_44 | 47961 | 49931 | - | 3.A.23.1.1 |
| pfam | HRGMv2_2393_35 | HRGMv2_2393_35_45 | 50182 | 50646 | - | MGS |
| TC | HRGMv2_2393_35 | HRGMv2_2393_35_46 | 51031 | 52377 | + | 3.A.1.103.6 |
| pfam | HRGMv2_2393_35 | HRGMv2_2393_35_47 | 52361 | 53143 | + | PCMT | Methyltransf_11 |
| CAZyme | HRGMv2_2393_35 | HRGMv2_2393_35_48 | 53136 | 56246 | + | GT2 |
| CAZyme | HRGMv2_2393_35 | HRGMv2_2393_35_49 | 56334 | 57116 | + | GT2 |
Gene ID: HRGMv2_2393_35_43
Type: TC
Location: 46413 - 47768 (-)
Type: TC
Location: 46413 - 47768 (-)
Gene ID: HRGMv2_2393_35_44
Type: TC
Location: 47961 - 49931 (-)
Type: TC
Location: 47961 - 49931 (-)
Gene ID: HRGMv2_2393_35_45
Type: pfam
Location: 50182 - 50646 (-)
Type: pfam
Location: 50182 - 50646 (-)
Gene ID: HRGMv2_2393_35_46
Type: TC
Location: 51031 - 52377 (+)
Type: TC
Location: 51031 - 52377 (+)
Gene ID: HRGMv2_2393_35_47
Type: pfam
Location: 52361 - 53143 (+)
Type: pfam
Location: 52361 - 53143 (+)
Gene ID: HRGMv2_2393_35_48
Type: CAZyme
Location: 53136 - 56246 (+)
Type: CAZyme
Location: 53136 - 56246 (+)
Gene ID: HRGMv2_2393_35_49
Type: CAZyme
Location: 56334 - 57116 (+)
Type: CAZyme
Location: 56334 - 57116 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium_A
Species
Lachnoclostridium_A sp002160755
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.